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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS005069
(Phe_427_21_prscs_METAss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Atrial fibrillation (PheCode 427.21)
atrial fibrillation
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005069/ScoringFiles/PGS005069.txt.gz
PGS005070
(Phe_427_21_prscs_METAss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Atrial fibrillation (PheCode 427.21)
atrial fibrillation
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005070/ScoringFiles/PGS005070.txt.gz
PGS005071
(Phe_427_21_prscs_METAss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Atrial fibrillation (PheCode 427.21)
atrial fibrillation
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005071/ScoringFiles/PGS005071.txt.gz
PGS005079
(Phe_428_1_prscs_AFRss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005079/ScoringFiles/PGS005079.txt.gz
PGS005080
(Phe_428_1_prscs_EURss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005080/ScoringFiles/PGS005080.txt.gz
PGS005081
(Phe_428_1_prscs_HISss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005081/ScoringFiles/PGS005081.txt.gz
PGS005082
(Phe_428_1_prscs_METAss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005082/ScoringFiles/PGS005082.txt.gz
PGS005083
(Phe_428_1_prscs_METAss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005083/ScoringFiles/PGS005083.txt.gz
PGS005084
(Phe_428_1_prscs_METAss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,273,897
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005084/ScoringFiles/PGS005084.txt.gz
PGS005046
(Phe_411_2_prscsx_METAweight)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Myocardial infarction (PheCode 411.2)
myocardial infarction
1,273,891
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005046/ScoringFiles/PGS005046.txt.gz
PGS005059
(Phe_411_3_prscsx_METAweight)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,891
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005059/ScoringFiles/PGS005059.txt.gz
PGS005072
(Phe_427_21_prscsx_METAweight)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Atrial fibrillation (PheCode 427.21)
atrial fibrillation
1,273,891
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005072/ScoringFiles/PGS005072.txt.gz
PGS005053
(Phe_411_3_prscs_AFRss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,665
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005053/ScoringFiles/PGS005053.txt.gz
PGS005054
(Phe_411_3_prscs_EURss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,665
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005054/ScoringFiles/PGS005054.txt.gz
PGS005055
(Phe_411_3_prscs_HISss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,665
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005055/ScoringFiles/PGS005055.txt.gz
PGS005056
(Phe_411_3_prscs_METAss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,665
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005056/ScoringFiles/PGS005056.txt.gz
PGS005057
(Phe_411_3_prscs_METAss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,665
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005057/ScoringFiles/PGS005057.txt.gz
PGS005058
(Phe_411_3_prscs_METAss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Angina pectoris (PheCode 411.3)
angina pectoris
1,273,665
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005058/ScoringFiles/PGS005058.txt.gz
PGS004962
(Hemoglobin_Mean_INT_prscs_AFRss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Hemoglobin
hemoglobin measurement
1,273,252
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004962/ScoringFiles/PGS004962.txt.gz
PGS004963
(Hemoglobin_Mean_INT_prscs_EURss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Hemoglobin
hemoglobin measurement
1,273,252
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004963/ScoringFiles/PGS004963.txt.gz
PGS004964
(Hemoglobin_Mean_INT_prscs_HISss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Hemoglobin
hemoglobin measurement
1,273,252
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004964/ScoringFiles/PGS004964.txt.gz
PGS004965
(Hemoglobin_Mean_INT_prscs_METAss_afrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Hemoglobin
hemoglobin measurement
1,273,252
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004965/ScoringFiles/PGS004965.txt.gz
PGS004966
(Hemoglobin_Mean_INT_prscs_METAss_amrld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Hemoglobin
hemoglobin measurement
1,273,252
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004966/ScoringFiles/PGS004966.txt.gz
PGS004967
(Hemoglobin_Mean_INT_prscs_METAss_eurld)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Hemoglobin
hemoglobin measurement
1,273,252
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004967/ScoringFiles/PGS004967.txt.gz
PGS004834
(skin_cancer_PRSmixPlus_eur)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Skin cancer
melanoma
1,271,902
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004834/ScoringFiles/PGS004834.txt.gz
PGS003964
(DBP_weightedPRSsum)
PGP000510
|
Kurniansyah N
et al.
Nat Commun (2023)
Diastolic blood pressure
diastolic blood pressure
1,267,600
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003964/ScoringFiles/PGS003964.txt.gz
PGS003968
(SBP_weightedPRSsum)
PGP000510
|
Kurniansyah N
et al.
Nat Commun (2023)
Systolic blood pressure
systolic blood pressure
1,267,240
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003968/ScoringFiles/PGS003968.txt.gz
PGS002308
(PRScsx_T2D)
PGP000331
|
Ge T
et al.
Genome Med (2022)
Type 2 diabetes (T2D)
type 2 diabetes mellitus
1,259,754
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002308/ScoringFiles/PGS002308.txt.gz
PGS004772
(hct_PRSmix_sas)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Hematocrit
hematocrit
1,259,662
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004772/ScoringFiles/PGS004772.txt.gz
PGS004774
(hct_PRSmixPlus_sas)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Hematocrit
hematocrit
1,259,662
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004774/ScoringFiles/PGS004774.txt.gz
PGS005085
(Phe_428_1_prscsx_METAweight)
PGP000679
|
Gunn S
et al.
HGG Adv (2024)
Congestive heart failure (CHF), NOS (PheCode 428.1)
congestive heart failure
1,256,161
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005085/ScoringFiles/PGS005085.txt.gz
PGS002805
(GIANT_HEIGHT_YENGO_2022_PGS_WEIGHTS_HIS)
PGP000382
|
Yengo L
et al.
Nature (2022)
Height
body height
1,245,514
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002805/ScoringFiles/PGS002805.txt.gz
PGS000888
(GLGC_2021_ALL_LDL_PRS_weights_PRS-CS)
PGP000230
|
Graham SE
et al.
Nature (2021)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,239,184
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000888/ScoringFiles/PGS000888.txt.gz
PGS002781
(GLGC_2021_ALL_HDL_PRS_weights_PRS-CS)
PGP000366
|
Kanoni S
et al.
Genome Biol (2022)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,239,184
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002781/ScoringFiles/PGS002781.txt.gz
PGS002782
(GLGC_2021_ALL_nonHDL_PRS_weights_PRS-CS)
PGP000366
|
Kanoni S
et al.
Genome Biol (2022)
nonHDL Cholesterol
non-high density lipoprotein cholesterol measurement
1,239,184
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002782/ScoringFiles/PGS002782.txt.gz
PGS001801
(PRS_Ratio)
PGP000264
|
Moll M
et al.
Lancet Respir Med (2020)
FEV1/FVC ratio
FEV/FVC ratio
1,232,916
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001801/ScoringFiles/PGS001801.txt.gz
PGS000886
(GLGC_2021_AFR_LDL_PRS_weights_PRS-CS)
PGP000230
|
Graham SE
et al.
Nature (2021)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,222,318
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000886/ScoringFiles/PGS000886.txt.gz
PGS003961
(DBP_AFR)
PGP000510
|
Kurniansyah N
et al.
Nat Commun (2023)
Diastolic blood pressure
diastolic blood pressure
1,221,464
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003961/ScoringFiles/PGS003961.txt.gz
PGS003965
(SBP_AFR)
PGP000510
|
Kurniansyah N
et al.
Nat Commun (2023)
Systolic blood pressure
systolic blood pressure
1,221,464
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003965/ScoringFiles/PGS003965.txt.gz
PGS002724
(GIGASTROKE_iPGS_EUR)
PGP000333
|
Mishra A
et al.
Nature (2022)
Ischemic stroke
stroke
,
Ischemic stroke
1,213,574
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002724/ScoringFiles/PGS002724.txt.gz
PGS002932
(ExPRSweb_FPG_MAGIC-FastingGlucose_DBSLMM_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Fasting plasma glucose
fasting blood glucose measurement
1,202,298
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002932/ScoringFiles/PGS002932.txt.gz
PGS004721
(AST_PRSmixPlus_eur)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Aspartate aminotransferase level
aspartate aminotransferase measurement
1,196,185
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004721/ScoringFiles/PGS004721.txt.gz
PGS003365
(GSCAN_CigDay_2022_PRS_WEIGHTS_AFR)
PGP000410
|
Saunders GRB
et al.
Nature (2022)
Cigarettes smoked per day
cigarettes per day measurement
1,196,168
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003365/ScoringFiles/PGS003365.txt.gz
PGS003357
(GSCAN_SmkInit_2022_PRS_WEIGHTS_AFR)
PGP000410
|
Saunders GRB
et al.
Nature (2022)
Smoking initiation
smoking initiation
1,194,472
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003357/ScoringFiles/PGS003357.txt.gz
PGS004643
(LDL_EAS_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,194,231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004643/ScoringFiles/PGS004643.txt.gz
PGS004829
(sbp_PRSmix_eur)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Systolic blood pressure
systolic blood pressure
1,194,211
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004829/ScoringFiles/PGS004829.txt.gz
PGS003369
(GSCAN_SmkCes_2022_PRS_WEIGHTS_AFR)
PGP000410
|
Saunders GRB
et al.
Nature (2022)
Smoking cessation
smoking cessation
1,193,789
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003369/ScoringFiles/PGS003369.txt.gz
PGS003361
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_AFR)
PGP000410
|
Saunders GRB
et al.
Nature (2022)
Age of smoking initiation
age at initiation of smoking
1,193,754
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003361/ScoringFiles/PGS003361.txt.gz
PGS004658
(logTG_EAS_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
Log triglycerides
triglyceride measurement
1,192,539
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004658/ScoringFiles/PGS004658.txt.gz
PGS003792
(LDL_EAS_LDpred2)
PGP000489
|
Zhang H
et al.
Nat Genet (2023)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,191,112
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003792/ScoringFiles/PGS003792.txt.gz
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