Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004799
(migraine_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Migraine migraine disorder 4,319,950
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004799/ScoringFiles/PGS004799.txt.gz
PGS004752
(current_smoker_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 4,496,606
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004752/ScoringFiles/PGS004752.txt.gz
PGS004754
(current_smoker_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 4,496,606
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004754/ScoringFiles/PGS004754.txt.gz
PGS004735
(bmi_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Body mass index (BMI) body mass index 4,536,322
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004735/ScoringFiles/PGS004735.txt.gz
PGS004777
(hdl_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 4,547,847
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004777/ScoringFiles/PGS004777.txt.gz
PGS004839
(t2d_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 4,594,694
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004839/ScoringFiles/PGS004839.txt.gz
PGS003222
(ExPRSweb_eGFR_20171017-MW-eGFR-EA_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate glomerular filtration rate 4,656,243
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003222/ScoringFiles/PGS003222.txt.gz
PGS004827
(RDW_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red cell distribution width Red cell distribution width 4,698,860
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004827/ScoringFiles/PGS004827.txt.gz
PGS003227
(ExPRSweb_eGFR_20171017-MW-eGFR-EA_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate glomerular filtration rate 4,728,961
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003227/ScoringFiles/PGS003227.txt.gz
PGS004745
(cad_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Coronary artery disease coronary artery disease 4,769,577
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004745/ScoringFiles/PGS004745.txt.gz
PGS003578
(MTAG.All.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,786,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003578/ScoringFiles/PGS003578.txt.gz
PGS003579
(MTAG.AllDep.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,786,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003579/ScoringFiles/PGS003579.txt.gz
PGS003580
(MTAG.AllDepEnvs.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,786,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003580/ScoringFiles/PGS003580.txt.gz
PGS004830
(sbp_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 4,805,129
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004830/ScoringFiles/PGS004830.txt.gz
PGS003581
(MTAG.Envs.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,861,398
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003581/ScoringFiles/PGS003581.txt.gz
PGS003582
(MTAG.FamHist.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,861,398
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003582/ScoringFiles/PGS003582.txt.gz
PGS003583
(MTAG.GPpsy.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,861,398
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003583/ScoringFiles/PGS003583.txt.gz
PGS003102
(ExPRSweb_T2D_30054458-GCST006867_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 5,052,574
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003102/ScoringFiles/PGS003102.txt.gz
PGS003117
(ExPRSweb_T2D_30054458-GCST006867_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 5,052,993
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003117/ScoringFiles/PGS003117.txt.gz
PGS004826
(RDW_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red cell distribution width Red cell distribution width 5,175,389
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004826/ScoringFiles/PGS004826.txt.gz
PGS004828
(RDW_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red cell distribution width Red cell distribution width 5,175,389
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004828/ScoringFiles/PGS004828.txt.gz
PGS004787
(HTN_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hypertension hypertension 5,191,115
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004787/ScoringFiles/PGS004787.txt.gz
PGS004753
(current_smoker_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 5,469,505
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004753/ScoringFiles/PGS004753.txt.gz
PGS002828
(ExPRSweb_Alcohol_20403_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 5,498,032
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002828/ScoringFiles/PGS002828.txt.gz
PGS004836
(stroke_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Stroke stroke 5,644,266
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004836/ScoringFiles/PGS004836.txt.gz
PGS000379
(PRSWEB_PHECODE153.2_C3-COLON_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Colon cancer colon carcinoma 5,715,093
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000379/ScoringFiles/PGS000379.txt.gz
PGS000377
(PRSWEB_PHECODE153.2_C18_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Colon cancer colon carcinoma 5,740,814
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000377/ScoringFiles/PGS000377.txt.gz
PGS003576
(AutoImpAll.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 5,776,312
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003576/ScoringFiles/PGS003576.txt.gz
PGS003577
(AutoImpOnly.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 5,776,312
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003577/ScoringFiles/PGS003577.txt.gz
PGS003584
(SoftImpAll.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 5,776,312
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003584/ScoringFiles/PGS003584.txt.gz
PGS003585
(SoftImpOnly.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 5,776,312
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003585/ScoringFiles/PGS003585.txt.gz
PGS004780
(height_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Height body height 5,967,476
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004780/ScoringFiles/PGS004780.txt.gz
PGS002725
(GIGASTROKE_iPGS_EAS)
 PGP000333 |
Mishra A et al. Nature (2022)
 Ischemic stroke stroke,
Ischemic stroke		 6,010,730
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002725/ScoringFiles/PGS002725.txt.gz
PGS004832
(sbp_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 6,013,177
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004832/ScoringFiles/PGS004832.txt.gz
PGS004848
(tg_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Triglycerides triglyceride measurement 6,127,766
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004848/ScoringFiles/PGS004848.txt.gz
PGS004728
(Basophils_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Basophil count basophil count 6,132,012
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004728/ScoringFiles/PGS004728.txt.gz
PGS004730
(Basophils_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Basophil count basophil count 6,132,012
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004730/ScoringFiles/PGS004730.txt.gz
PGS004812
(Platelets_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Platelet count platelet count 6,146,883
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004812/ScoringFiles/PGS004812.txt.gz
PGS004814
(Platelets_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Platelet count platelet count 6,146,883
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004814/ScoringFiles/PGS004814.txt.gz
PGS004844
(tc_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total cholesterol total cholesterol measurement 6,149,012
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004844/ScoringFiles/PGS004844.txt.gz
PGS000331
(PRS_AF)
 PGP000100 |
Mars N et al. Nat Med (2020)
 Atrial fibrillation atrial fibrillation 6,183,494
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000331/ScoringFiles/PGS000331.txt.gz
PGS003327
(ExPRSweb_Insomnia_1200_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Insomnia insomnia 6,214,923
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003327/ScoringFiles/PGS003327.txt.gz
PGS004846
(tg_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Triglycerides triglyceride measurement 6,248,300
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004846/ScoringFiles/PGS004846.txt.gz
PGS003082
(ExPRSweb_SBP_93-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Systolic blood pressure systolic blood pressure 6,341,932
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003082/ScoringFiles/PGS003082.txt.gz
PGS004690
(kidney_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Kidney cancer renal carcinoma 6,351,669
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004690/ScoringFiles/PGS004690.txt.gz
PGS004693
(pancreatic_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Pancreatic cancer pancreatic carcinoma 6,351,686
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004693/ScoringFiles/PGS004693.txt.gz
PGS004692
(ovarian_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Ovarian cancer ovarian carcinoma 6,385,666
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004692/ScoringFiles/PGS004692.txt.gz
PGS000332
(PRS_BC)
 PGP000100 |
Mars N et al. Nat Med (2020)
 Breast cancer breast carcinoma 6,390,808
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000332/ScoringFiles/PGS000332.txt.gz
PGS000329
(PRS_CHD)
 PGP000100 |
Mars N et al. Nat Med (2020)
 Coronary heart disease coronary artery disease 6,423,165
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000329/ScoringFiles/PGS000329.txt.gz
PGS002243
(ldpred_t2d)
 PGP000271 |
Mars N et al. Cell Genom (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 6,431,973
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002243/ScoringFiles/PGS002243.txt.gz
Showing 4701 to 4750 of 4838 rows