Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001009
(GBE_INI3064)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 PEF peak expiratory flow 9,523
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001009/ScoringFiles/PGS001009.txt.gz
PGS001010
(GBE_INI1003064)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 PEF pred. ratio peak expiratory flow 15,135
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001010/ScoringFiles/PGS001010.txt.gz
PGS002288
(PRS_POP)
 PGP000314 |
Pujol-Gualdo N et al. Nat Commun (2022)
 Pelvic organ prolapse pelvic organ prolapse 3,242,959
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002288/ScoringFiles/PGS002288.txt.gz
PGS000278
(PTX3)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Pentraxin-related protein PTX3 (PTX3) serum levels blood protein amount 552,474
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000278/ScoringFiles/PGS000278.txt.gz
PGS012562
(PRS8_PU)
 PGP000802 |
Li J et al. Environ Res (2024)
 Peptic ulcer disease peptic ulcer disease 8
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS012562/ScoringFiles/PGS012562.txt.gz
PGS019330
(TPMI_531_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 461,945
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019330/ScoringFiles/PGS019330.txt.gz
PGS019331
(TPMI_531_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 939,893
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019331/ScoringFiles/PGS019331.txt.gz
PGS019332
(TPMI_531_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 24,193
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019332/ScoringFiles/PGS019332.txt.gz
PGS019333
(TPMI_531_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 983,826
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019333/ScoringFiles/PGS019333.txt.gz
PGS019334
(TPMI_531_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 933,417
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019334/ScoringFiles/PGS019334.txt.gz
PGS001225
(GBE_INI30030)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Percentage of hematocrit hematocrit 15,721
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001225/ScoringFiles/PGS001225.txt.gz
PGS019310
(TPMI_523.3_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 800,498
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019310/ScoringFiles/PGS019310.txt.gz
PGS019311
(TPMI_523.3_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 939,880
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019311/ScoringFiles/PGS019311.txt.gz
PGS019312
(TPMI_523.3_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 507,697
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019312/ScoringFiles/PGS019312.txt.gz
PGS019313
(TPMI_523.3_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 983,817
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019313/ScoringFiles/PGS019313.txt.gz
PGS019314
(TPMI_523.3_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 934,116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019314/ScoringFiles/PGS019314.txt.gz
PGS012546
(EN_model_PAD)
 PGP000790 |
Hu J et al. Genet Med (2026)
 Peripheral arterial disease peripheral arterial disease 969,771
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS012546/ScoringFiles/PGS012546.txt.gz
PGS005158
(PRS19_PAD)
 PGP000705 |
Zhu K et al. Diabetes Care (2024)
 Peripheral artery disease peripheral arterial disease 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005158/ScoringFiles/PGS005158.txt.gz
PGS005217
(PRS_PAD)
 PGP000732 |
Flores AM et al. JAMA Cardiol (2025)
 Peripheral artery disease peripheral arterial disease 1,296,292
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005217/ScoringFiles/PGS005217.txt.gz
PGS019091
(TPMI_386.2_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral or central vertigo Vertigo 230,260
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019091/ScoringFiles/PGS019091.txt.gz
PGS019092
(TPMI_386.2_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral or central vertigo Vertigo 939,888
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019092/ScoringFiles/PGS019092.txt.gz
PGS019093
(TPMI_386.2_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral or central vertigo Vertigo 508,434
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019093/ScoringFiles/PGS019093.txt.gz
PGS019094
(TPMI_386.2_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral or central vertigo Vertigo 983,823
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019094/ScoringFiles/PGS019094.txt.gz
PGS019095
(TPMI_386.2_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral or central vertigo Vertigo 968,450
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019095/ScoringFiles/PGS019095.txt.gz
PGS019021
(TPMI_362.6_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral retinal degenerations retinal degeneration 107
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019021/ScoringFiles/PGS019021.txt.gz
PGS019022
(TPMI_362.6_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral retinal degenerations retinal degeneration 939,860
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019022/ScoringFiles/PGS019022.txt.gz
PGS019023
(TPMI_362.6_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral retinal degenerations retinal degeneration 24,607
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019023/ScoringFiles/PGS019023.txt.gz
PGS019024
(TPMI_362.6_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral retinal degenerations retinal degeneration 983,802
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019024/ScoringFiles/PGS019024.txt.gz
PGS019025
(TPMI_362.6_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peripheral retinal degenerations retinal degeneration 1,011,772
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019025/ScoringFiles/PGS019025.txt.gz
PGS001843
(portability-PLR_443.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Peripheral vascular disease, unspecified peripheral vascular disease 242
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001843/ScoringFiles/PGS001843.txt.gz
PGS002055
(portability-ldpred2_443.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Peripheral vascular disease, unspecified peripheral vascular disease 599,514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002055/ScoringFiles/PGS002055.txt.gz
PGS001280
(GBE_HC943)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 PE (time-to-event) pulmonary embolism 88
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001280/ScoringFiles/PGS001280.txt.gz
PGS001844
(portability-PLR_451)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phlebitis and thrombophlebitis Thrombophlebitis,
phlebitis		 431
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001844/ScoringFiles/PGS001844.txt.gz
PGS002056
(portability-ldpred2_451)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phlebitis and thrombophlebitis Thrombophlebitis,
phlebitis		 114,679
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002056/ScoringFiles/PGS002056.txt.gz
PGS000961
(GBE_HC987)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Phlebitis and thrombophlebitis (time-to-event) Thrombophlebitis,
phlebitis		 1,143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000961/ScoringFiles/PGS000961.txt.gz
PGS001998
(portability-PLR_phosphate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phosphate phosphate measurement 47,793
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001998/ScoringFiles/PGS001998.txt.gz
PGS002216
(portability-ldpred2_phosphate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phosphate phosphate measurement 708,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002216/ScoringFiles/PGS002216.txt.gz
PGS004339
(X30810.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Phosphate (mmol/L) phosphate measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004339/ScoringFiles/PGS004339.txt.gz
PGS000692
(snpnet.Phosphate)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Phosphate [mmol/L] phosphate measurement 12,448
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000692/ScoringFiles/PGS000692.txt.gz - Check Terms/Licenses
PGS002255
(PRS_measured)
 PGP000280 |
Kujala UM et al. Med Sci Sports Exerc (2020)
 Physical activity (measured) physical activity measurement 1,140,182
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002255/ScoringFiles/PGS002255.txt.gz
PGS002254
(PRS_reported)
 PGP000280 |
Kujala UM et al. Med Sci Sports Exerc (2020)
 Physical activity (self-reported) physical activity measurement,
self-reported trait		 1,142,416
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002254/ScoringFiles/PGS002254.txt.gz
PGS000276
(PlGF)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Placenta growth factor (PlGF) serum levels blood protein amount 552,275
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000276/ScoringFiles/PGS000276.txt.gz
PGS000109
(plt)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Platelet count platelet count 26,683
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000109/ScoringFiles/PGS000109.txt.gz
PGS000186
(plt)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Platelet count platelet count 739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000186/ScoringFiles/PGS000186.txt.gz
PGS001238
(GBE_INI30080)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Platelet count platelet count 24,893
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001238/ScoringFiles/PGS001238.txt.gz
PGS001973
(portability-PLR_log_platelet)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet count platelet count 60,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001973/ScoringFiles/PGS001973.txt.gz
PGS002191
(portability-ldpred2_log_platelet)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet count platelet count 663,591
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002191/ScoringFiles/PGS002191.txt.gz
PGS002343
(blood_PLATELET_COUNT.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Platelet count platelet count 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002343/ScoringFiles/PGS002343.txt.gz
PGS002373
(blood_PLATELET_COUNT.BOLT-LMM-BBJ)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Platelet count platelet count 920,923
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002373/ScoringFiles/PGS002373.txt.gz
PGS002415
(blood_PLATELET_COUNT.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Platelet count platelet count 27,345
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002415/ScoringFiles/PGS002415.txt.gz
Showing 4851 to 4900 of 6982 rows