PGS Publication: PGP000423

Publication Information (EuropePMC)
Title Genetic Risk Score for Intracranial Aneurysms: Prediction of Subarachnoid Hemorrhage and Role in Clinical Heterogeneity.
PubMed ID 36655558(Europe PMC)
doi 10.1161/strokeaha.122.040715
Publication Date Jan. 19, 2023
Journal Stroke
Author(s) Bakker MK, Kanning JP, Abraham G, Martinsen AE, Winsvold BS, Zwart JA, Bourcier R, Sawada T, Koido M, Kamatani Y, Morel S, Amouyel P, Debette S, Bijlenga P, Berrandou T, Ganesh SK, Bouatia-Naji N, Jones G, Bown M, Rinkel GJE, Veldink JH, Ruigrok YM, HUNT All-In Stroke, CADISP group, International Consortium for Blood Pressure, International Headache Genetics Consortium, International Stroke Genetics Consortium (ISGC) Intracranial Aneurysm Working Group.
Released in PGS Catalog: Jan. 24, 2023

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported

PGS Developed By This Publication

Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003408
(3_withUKB_sexFemale_metaGRS.weights)
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Intracranial aneurysm brain aneurysm,
female		 6,671,269
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003408/ScoringFiles/PGS003408.txt.gz
PGS003410
(5_withUKB_sexMale_IAonly.weights)
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Intracranial aneurysm brain aneurysm,
male		 6,618,190
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003410/ScoringFiles/PGS003410.txt.gz
PGS003407
(2_withUKB_sexMale_metaGRS.weights)
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Intracranial aneurysm brain aneurysm,
male		 6,618,190
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003407/ScoringFiles/PGS003407.txt.gz
PGS003406
(1_withUKB_sexAll_metaGRS.weights)
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Intracranial aneurysm brain aneurysm 6,852,195
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003406/ScoringFiles/PGS003406.txt.gz
PGS003409
(4_withUKB_sexAll_IAonly.weights)
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Intracranial aneurysm brain aneurysm 6,852,195
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003409/ScoringFiles/PGS003409.txt.gz
PGS003411
(6_withUKB_sexFemale_IAonly.weights)
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Intracranial aneurysm brain aneurysm,
female		 6,671,269
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003411/ScoringFiles/PGS003411.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM017048 PGS003406
(1_withUKB_sexAll_metaGRS.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Aneurysmal subarachnoid hemorrhage hazard HR: 1.344 C-index: 0.652 — sex, systolic blood pressure, cigarette packs per day —
PPM017049 PGS003407
(2_withUKB_sexMale_metaGRS.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Aneurysmal subarachnoid hemorrhage hazard (men only) HR: 1.254 C-index: 0.571 — sex, systolic blood pressure, cigarette packs per day —
PPM017050 PGS003408
(3_withUKB_sexFemale_metaGRS.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Aneurysmal subarachnoid hemorrhage hazard (women only) HR: 1.374 C-index: 0.727 — sex, systolic blood pressure, cigarette packs per day —
PPM017051 PGS003409
(4_withUKB_sexAll_IAonly.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Aneurysmal subarachnoid hemorrhage hazard HR: 1.254 C-index: 0.65 — sex, systolic blood pressure, cigarette packs per day —
PPM017052 PGS003410
(5_withUKB_sexMale_IAonly.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Aneurysmal subarachnoid hemorrhage hazard (men only) HR: 1.199 C-index: 0.593 — sex, systolic blood pressure, cigarette packs per day —
PPM017053 PGS003411
(6_withUKB_sexFemale_IAonly.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Aneurysmal subarachnoid hemorrhage hazard (women only) HR: 1.295 C-index: 0.722 — sex, systolic blood pressure, cigarette packs per day —
PPM017054 PGS003406
(1_withUKB_sexAll_metaGRS.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Intracranial aneurysm cases OR: 1.094 C-index: 0.763 — — —
PPM017055 PGS003407
(2_withUKB_sexMale_metaGRS.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Intracranial aneurysm cases (men only) OR: 1.091 C-index: 0.762 — — —
PPM017056 PGS003408
(3_withUKB_sexFemale_metaGRS.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Intracranial aneurysm cases (women only) OR: 1.089 C-index: 0.77 — — —
PPM017057 PGS003409
(4_withUKB_sexAll_IAonly.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Intracranial aneurysm cases OR: 1.124 C-index: 0.764 — — —
PPM017058 PGS003410
(5_withUKB_sexMale_IAonly.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Intracranial aneurysm cases (men only) OR: 1.165 C-index: 0.763 — — —
PPM017059 PGS003411
(6_withUKB_sexFemale_IAonly.weights)
 PSS010105|
European Ancestry|
69,396 individuals
 PGP000423 |
Bakker MK et al. Stroke (2023)
 Reported Trait: Intracranial aneurysm cases (women only) OR: 1.085 C-index: 0.77 — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010105 ICD codes I67.1 and I60 —
[
  • 828 cases
  • , 68,568 controls
]
 — European
(Norwegian)		 — HUNT2 —