| Publication Information (EuropePMC) | |
| Title | Exploring ethnic and racial differences in intraocular pressure and glaucoma: The Canadian Longitudinal Study on aging. |
| PubMed ID | 38586381(Europe PMC) |
| doi | 10.1016/j.heliyon.2024.e28611 |
| Publication Date | March 26, 2024 |
| Journal | Heliyon |
| Author(s) | Grant A, Roy-Gagnon MH, Bastasic J, Talekar A, Miller G, Li G, Freeman EE. |
| Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
|---|---|---|---|---|---|---|
| PGS000137 (MTAG_glaucoma) |
PGP000066 | Craig JE et al. Nat Genet (2020) |
Glaucoma | glaucoma | 2,673 | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000137/ScoringFiles/PGS000137.txt.gz |
|
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|---|
| PPM030737 | PGS000137 (MTAG_glaucoma) |
PSS012272| Multi-ancestry (including European)| 25,394 individuals |
PGP000815 | Grant A et al. Heliyon (2024) |Ext. |
Reported Trait: IOP | β: 0.81 [0.74, 0.87] | — | — | age, sex, education, income, smoking, alcohol intake, BMI, diabetes, high blood pressure, eye care utilization, and province | — |
| PPM030738 | PGS000137 (MTAG_glaucoma) |
PSS012272| Multi-ancestry (including European)| 25,394 individuals |
PGP000815 | Grant A et al. Heliyon (2024) |Ext. |
Reported Trait: glaucoma | OR: 1.56 [1.42, 1.71] | — | — | age, sex, education, income, smoking, alcohol intake, BMI, diabetes, high blood pressure, and province | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS012272 | — | — | 24,043 individuals | — | European | — | CLSA | — |
| PSS012272 | — | — | 160 individuals | — | African American or Afro-Caribbean | — | CLSA | — |
| PSS012272 | — | — | 205 individuals | — | East Asian (Chinese, Japanese and Korean) |
— | CLSA | — |
| PSS012272 | — | — | 80 individuals | — | South East Asian (Southeast Asian and Filipino) |
— | CLSA | — |
| PSS012272 | — | — | 209 individuals | — | South East Asian | — | CLSA | — |
| PSS012272 | — | — | 99 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) (Arab and West Asian) |
— | CLSA | — |
| PSS012272 | — | — | 82 individuals | — | Hispanic or Latin American (Latin American) |
— | CLSA | — |
| PSS012272 | — | — | 516 individuals | — | Not reported | — | CLSA | — |