Polygenic Score (PGS) ID: PGS005212

Predicted Trait
Reported Trait Alcohol use disorder (7-item problematic use index)
Mapped Trait(s) alcohol use disorder measurement (EFO_0009458)
Additional Trait Information A subscale of the Alcohol Use Disorders Identification Test (AUDIT), measuring alcohol related problems (AUDIT-P, items 4 to 10) within the past year.
Released in PGS Catalog: May 20, 2025
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Score Details

Score Construction
PGS Name AUDIT_P
Development Method
Name lassosum
Parameters The penalty parameters were selected based on maximizing the adjusted R2 for the respective alcohol phenotype while adjusting for the first 10 genetic PCs, age, sex, and an indicator for wave (indicating the version of genotyping array used for genetic sample processing).
Variants
Original Genome Build hg19
Number of Variants 384,933
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000731
Citation (link to publication) Deng WQ et al. Alcohol Alcohol (2024)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
121,604 individuals (100%)
PGS Evaluation
European: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
GWAS Catalog: GCST006717
Europe PMC: 30336701
 121,604 individuals European NR

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM022593 PSS012026|
European Ancestry|
1,534 individuals
 PGP000731 |
Deng WQ et al. Alcohol Alcohol (2024)
 Reported Trait: Alcohol use disorder (7-item problematic use index) β: 0.07 — adjusted R2 only by the PGS: 0.46 age, sex, first 10 genetic principal components beta coefficient for standardized PGS and standardized trait

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS012026 — — 1,534 individuals,
43.0 % Male samples
 Mean = 34.9 years
Sd = 14.2 years		 European — PATH —