Predicted Trait | |
Reported Trait | Addiction risk factors |
Mapped Trait(s) | substance-related disorder (MONDO_0002494) |
Additional Trait Information | A general addiction factor derived using genomic SEM on substance use disorders. |
Score Construction | |
PGS Name | addiction_rf |
Development Method | |
Name | lassosum |
Parameters | pseudo-validation option |
Variants | |
Original Genome Build | hg19 |
Number of Variants | 11,627 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000731 |
Citation (link to publication) | Deng WQ et al. Alcohol Alcohol (2024) |
Ancestry Distribution | |
Source of Variant Associations (GWAS) | European: 100% 647,703 individuals (100%) |
PGS Evaluation | European: 100% 1 Sample Sets |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
---|---|---|---|
GWAS Catalog: GCST90274724 Europe PMC: 37250466 |
647,703 individuals | European | NR |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM022596 | PSS012026| European Ancestry| 1,534 individuals |
PGP000731 | Deng WQ et al. Alcohol Alcohol (2024) |
Reported Trait: Alcohol use disorder (7-item problematic use index) | β: 0.01 | — | adjusted R2 only by the PGS: -0.06 | age, sex, first 10 genetic principal components | beta coefficient for standardized PGS and standardized trait |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS012026 | — | — | 1,534 individuals, 43.0 % Male samples |
Mean = 34.9 years Sd = 14.2 years |
European | — | PATH | — |