Polygenic Score (PGS) ID: PGS018434

Predicted Trait
Reported Trait Chronic hepatitis
Mapped Trait(s) chronic hepatitis (EFO_0008496)
Released in PGS Catalog: July 29, 2026
Download Score FTP directory
Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name TPMI_070.4_SBayesR
Development Method
Name SBayesR
Parameters NR
Variants
Original Genome Build GRCh38
Number of Variants 947,767
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000835
Citation (link to publication) Chen HH et al. Nature (2025)
Ancestry Distribution
Source of Variant
Associations (GWAS)
East Asian: 100%
281,568 individuals (100%)
Score Development/Training
East Asian: 100%
61,419 individuals (100%)
PGS Evaluation
East Asian: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
—
[
  • 6,634 cases
  • , 274,934 controls
]
,
43.22 % Male samples
 East Asian
(Han Chinese)		 TPMI
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
—
[
  • 2,169 cases
  • , 59,250 controls
]
,
44.42 % Male samples
 East Asian
(Han Chinese)		 TPMI 573.3,K71.0, K71.10, K71.11, K71.2, K71.3, K71.4, K71.50, K71.51, K71.6, K71.7, K71.8, K71.9, K75.2, K75.3, K75.89, K75.9, K76.4 — — — —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM036616 PSS012331|
East Asian Ancestry|
16,631 individuals
 PGP000835 |
Chen HH et al. Nature (2025)
 Reported Trait: Chronic hepatitis — AUROC: 0.64746 R²: 0.06666 sex, age, array, PCs 1-10 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS012331 571.4,K71.5, K73, K75.4 —
[
  • 1,720 cases
  • , 14,911 controls
]
,
45.45 % Male samples
 — East Asian
(Han Chinese)		 — TPMI —