| Predicted Trait | |
| Reported Trait | HbA1c |
| Mapped Trait(s) | HbA1c measurement (EFO_0004541) |
| Score Construction | |
| PGS Name | GRS122_HbA1c |
| Development Method | |
| Name | Genome-wide significant SNPs |
| Parameters | NR |
| Variants | |
| Original Genome Build | NR |
| Number of Variants | 122 |
| Effect Weight Type | beta |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000848 |
| Citation (link to publication) | Mandla R et al. Diabetes Care (2024) |
| Ancestry Distribution | |
| Source of Variant Associations (GWAS) | European: 68% East Asian: 15.4% Hispanic or Latin American: 7.1% African: 5.1% South Asian: 4.4% 215,974 individuals (100%) |
| PGS Evaluation | |
| Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
|---|---|---|---|
GWAS Catalog: GCST90002247 Europe PMC: 34059833 |
6,647 individuals | African American or Afro-Caribbean | Multiple |
GWAS Catalog: GCST90002247 Europe PMC: 34059833 |
33,307 individuals | East Asian | Multiple |
GWAS Catalog: GCST90002247 Europe PMC: 34059833 |
146,806 individuals | European | Multiple |
GWAS Catalog: GCST90002247 Europe PMC: 34059833 |
15,248 individuals | Hispanic or Latin American | Multiple |
GWAS Catalog: GCST90002247 Europe PMC: 34059833 |
9,525 individuals | South Asian | Multiple |
GWAS Catalog: GCST90002247 Europe PMC: 34059833 |
4,441 individuals | Sub-Saharan African | Multiple |
|
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM038158 | PSS013851| European Ancestry| 16,682 individuals |
PGP000848 | Mandla R et al. Diabetes Care (2024) |
Reported Trait: HbA1c in G6PD non-carriets | β: 0.06 (0.01) | — | — | age, sex, diabetes status, and 10 principal components | — |
| PPM038159 | PSS013850| African Ancestry| 6,672 individuals |
PGP000848 | Mandla R et al. Diabetes Care (2024) |
Reported Trait: HbA1c | β: 0.05 (0.02) | — | — | age, sex, and 10 principal components | — |
| PPM038160 | PSS013850| African Ancestry| 6,672 individuals |
PGP000848 | Mandla R et al. Diabetes Care (2024) |
Reported Trait: HbA1c in G6PD non-carriets | β: 0.05 (0.02) | — | — | age, sex, and 10 principal components | — |
| PPM038164 | PSS013852| Multi-ancestry (including European)| 29,828 individuals |
PGP000848 | Mandla R et al. Diabetes Care (2024) |
Reported Trait: Diabetic retinopathy in diabetes | OR: 0.82 (0.09) | — | — | age, sex, ancestry PC, retinopathy risk factors, measured HbA1c | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS013851 | — | — | 16,682 individuals | — | European | — | AllofUs | — |
| PSS013852 | — | — | 3,282 individuals | — | European | — | AllofUs, UKB | — |
| PSS013852 | — | — | 26,546 individuals | — | African unspecified | — | AllofUs, UKB | — |
| PSS013850 | — | — | 6,672 individuals | — | African unspecified | — | AllofUs | — |