Trait: P wave duration

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005094
Description measurement of the time from start to finish of the P wave, in the electrocardiograph illustrating the initial deflection of the cardiac cycle, representing the excitation of the atria.
Trait category
Cardiovascular measurement
Mapped term SNOMEDCT:251204004

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001902
(portability-PLR_ECG_P_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 P duration P wave duration 640
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001902/ScoringFiles/PGS001902.txt.gz
PGS002116
(portability-ldpred2_ECG_P_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 P duration P wave duration 564,874
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002116/ScoringFiles/PGS002116.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010099 PGS001902
(portability-PLR_ECG_P_duration)
 PSS009365|
European Ancestry|
1,622 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.0975 [0.0487, 0.1458] sex, age, birth date, deprivation index, 16 PCs —
PPM010100 PGS001902
(portability-PLR_ECG_P_duration)
 PSS009139|
European Ancestry|
310 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.1126 [-0.0026, 0.2249] sex, age, birth date, deprivation index, 16 PCs —
PPM010101 PGS001902
(portability-PLR_ECG_P_duration)
 PSS008693|
European Ancestry|
474 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.0776 [-0.0146, 0.1684] sex, age, birth date, deprivation index, 16 PCs —
PPM010102 PGS001902
(portability-PLR_ECG_P_duration)
 PSS008467|
Greater Middle Eastern Ancestry|
49 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): -0.1487 [-0.4886, 0.2303] sex, age, birth date, deprivation index, 16 PCs —
PPM010103 PGS001902
(portability-PLR_ECG_P_duration)
 PSS008247|
South Asian Ancestry|
299 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.0714 [-0.0464, 0.1872] sex, age, birth date, deprivation index, 16 PCs —
PPM010104 PGS001902
(portability-PLR_ECG_P_duration)
 PSS008025|
East Asian Ancestry|
134 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.2031 [0.0199, 0.3731] sex, age, birth date, deprivation index, 16 PCs —
PPM010105 PGS001902
(portability-PLR_ECG_P_duration)
 PSS007811|
African Ancestry|
76 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.2803 [0.0188, 0.5059] sex, age, birth date, deprivation index, 16 PCs —
PPM010106 PGS001902
(portability-PLR_ECG_P_duration)
 PSS008915|
African Ancestry|
138 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.1764 [-0.0045, 0.3461] sex, age, birth date, deprivation index, 16 PCs —
PPM011785 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS008693|
European Ancestry|
474 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.0919 sex, age, birth date, deprivation index, 16 PCs —
PPM011783 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS009365|
European Ancestry|
1,622 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.0694 [0.0205, 0.118] sex, age, birth date, deprivation index, 16 PCs —
PPM011784 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS009139|
European Ancestry|
310 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.1064 [-0.0089, 0.2189] sex, age, birth date, deprivation index, 16 PCs —
PPM011786 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS008467|
Greater Middle Eastern Ancestry|
49 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): -0.0742 [-0.429, 0.3005] sex, age, birth date, deprivation index, 16 PCs —
PPM011787 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS008247|
South Asian Ancestry|
299 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.0224 [-0.0953, 0.1394] sex, age, birth date, deprivation index, 16 PCs —
PPM011788 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS008025|
East Asian Ancestry|
134 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.1083 [-0.0771, 0.2865] sex, age, birth date, deprivation index, 16 PCs —
PPM011789 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS007811|
African Ancestry|
76 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.1808 [-0.0862, 0.4236] sex, age, birth date, deprivation index, 16 PCs —
PPM011790 PGS002116
(portability-ldpred2_ECG_P_duration)
 PSS008915|
African Ancestry|
138 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: P duration — — Partial Correlation (partial-r): 0.1921 [0.0118, 0.3604] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008467 — — 49 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009139 — — 310 individuals — European Poland (NE Europe) UKB —
PSS009365 — — 1,622 individuals — European UK (+ Ireland) UKB —
PSS008693 — — 474 individuals — European Italy (South Europe) UKB —
PSS008247 — — 299 individuals — South Asian India (South Asia) UKB —
PSS008915 — — 138 individuals — African unspecified Nigeria (West Africa) UKB —
PSS008025 — — 134 individuals — East Asian China (East Asia) UKB —
PSS007811 — — 76 individuals — African American or Afro-Caribbean Carribean UKB —