Trait: P wave duration

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005094
Description measurement of the time from start to finish of the P wave, in the electrocardiograph illustrating the initial deflection of the cardiac cycle, representing the excitation of the atria.
Trait category
Cardiovascular measurement
Mapped term SNOMEDCT:251204004

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS001902
(portability-PLR_ECG_P_duration)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
P duration P wave duration 640
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001902/ScoringFiles/PGS001902.txt.gz
PGS002116
(portability-ldpred2_ECG_P_duration)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
P duration P wave duration 564,874
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002116/ScoringFiles/PGS002116.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010099 PGS001902
(portability-PLR_ECG_P_duration)
PSS009365|
European Ancestry|
1,622 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.0975 [0.0487, 0.1458] sex, age, birth date, deprivation index, 16 PCs
PPM010100 PGS001902
(portability-PLR_ECG_P_duration)
PSS009139|
European Ancestry|
310 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.1126 [-0.0026, 0.2249] sex, age, birth date, deprivation index, 16 PCs
PPM010101 PGS001902
(portability-PLR_ECG_P_duration)
PSS008693|
European Ancestry|
474 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.0776 [-0.0146, 0.1684] sex, age, birth date, deprivation index, 16 PCs
PPM010102 PGS001902
(portability-PLR_ECG_P_duration)
PSS008467|
Greater Middle Eastern Ancestry|
49 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): -0.1487 [-0.4886, 0.2303] sex, age, birth date, deprivation index, 16 PCs
PPM010103 PGS001902
(portability-PLR_ECG_P_duration)
PSS008247|
South Asian Ancestry|
299 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.0714 [-0.0464, 0.1872] sex, age, birth date, deprivation index, 16 PCs
PPM010104 PGS001902
(portability-PLR_ECG_P_duration)
PSS008025|
East Asian Ancestry|
134 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.2031 [0.0199, 0.3731] sex, age, birth date, deprivation index, 16 PCs
PPM010105 PGS001902
(portability-PLR_ECG_P_duration)
PSS007811|
African Ancestry|
76 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.2803 [0.0188, 0.5059] sex, age, birth date, deprivation index, 16 PCs
PPM010106 PGS001902
(portability-PLR_ECG_P_duration)
PSS008915|
African Ancestry|
138 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.1764 [-0.0045, 0.3461] sex, age, birth date, deprivation index, 16 PCs
PPM011785 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS008693|
European Ancestry|
474 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.0919 sex, age, birth date, deprivation index, 16 PCs
PPM011783 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS009365|
European Ancestry|
1,622 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.0694 [0.0205, 0.118] sex, age, birth date, deprivation index, 16 PCs
PPM011784 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS009139|
European Ancestry|
310 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.1064 [-0.0089, 0.2189] sex, age, birth date, deprivation index, 16 PCs
PPM011786 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS008467|
Greater Middle Eastern Ancestry|
49 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): -0.0742 [-0.429, 0.3005] sex, age, birth date, deprivation index, 16 PCs
PPM011787 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS008247|
South Asian Ancestry|
299 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.0224 [-0.0953, 0.1394] sex, age, birth date, deprivation index, 16 PCs
PPM011788 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS008025|
East Asian Ancestry|
134 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.1083 [-0.0771, 0.2865] sex, age, birth date, deprivation index, 16 PCs
PPM011789 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS007811|
African Ancestry|
76 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.1808 [-0.0862, 0.4236] sex, age, birth date, deprivation index, 16 PCs
PPM011790 PGS002116
(portability-ldpred2_ECG_P_duration)
PSS008915|
African Ancestry|
138 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: P duration Partial Correlation (partial-r): 0.1921 [0.0118, 0.3604] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008467 49 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009139 310 individuals European Poland (NE Europe) UKB
PSS009365 1,622 individuals European UK (+ Ireland) UKB
PSS008693 474 individuals European Italy (South Europe) UKB
PSS008247 299 individuals South Asian India (South Asia) UKB
PSS008915 138 individuals African unspecified Nigeria (West Africa) UKB
PSS008025 134 individuals East Asian China (East Asia) UKB
PSS007811 76 individuals African American or Afro-Caribbean Carribean UKB