Trait: sleep duration

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005271
Description duration of sleep, measured either via a self-reporting questionnaire, interview or through obversation in a sleep lab
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001150
(GBE_INI1160)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Sleep duration sleep duration 4,106
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001150/ScoringFiles/PGS001150.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008477 PGS001150
(GBE_INI1160)
PSS004796|
African Ancestry|
6,246 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sleep duration : 0.01014 [0.0053, 0.01499]
Incremental R2 (full-covars): 0.00154
PGS R2 (no covariates): 0.00168 [-0.00031, 0.00366]
age, sex, UKB array type, Genotype PCs
PPM008478 PGS001150
(GBE_INI1160)
PSS004797|
East Asian Ancestry|
1,652 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sleep duration : 0.04058 [0.02227, 0.0589]
Incremental R2 (full-covars): 0.00193
PGS R2 (no covariates): 0.00695 [-0.00089, 0.0148]
age, sex, UKB array type, Genotype PCs
PPM008479 PGS001150
(GBE_INI1160)
PSS004798|
European Ancestry|
24,750 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sleep duration : 0.01244 [0.00971, 0.01518]
Incremental R2 (full-covars): 0.00809
PGS R2 (no covariates): 0.00875 [0.00645, 0.01105]
age, sex, UKB array type, Genotype PCs
PPM008480 PGS001150
(GBE_INI1160)
PSS004799|
South Asian Ancestry|
7,598 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sleep duration : 0.008 [0.00407, 0.01193]
Incremental R2 (full-covars): 0.00387
PGS R2 (no covariates): 0.00403 [0.00123, 0.00683]
age, sex, UKB array type, Genotype PCs
PPM008481 PGS001150
(GBE_INI1160)
PSS004800|
European Ancestry|
67,069 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sleep duration : 0.01307 [0.01137, 0.01477]
Incremental R2 (full-covars): 0.00777
PGS R2 (no covariates): 0.00798 [0.00664, 0.00932]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS004796 6,246 individuals African unspecified UKB
PSS004797 1,652 individuals East Asian UKB
PSS004798 24,750 individuals European non-white British ancestry UKB
PSS004799 7,598 individuals South Asian UKB
PSS004800 67,069 individuals European white British ancestry UKB Testing cohort (heldout set)