Trait: device complication

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009519
Description Any problem arising from the use of a medical device. [ NCI ]
Trait category
Other disease
Mapped terms 6 mapped terms
  • ICD10:T82
  • ICD10:T83
  • ICD10:T84
  • ICD10:T85
  • MedDRA:10056488
  • NCIt:C78254

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
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Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004500
(disease.T84.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 T84 (Complications of internal orthopaedic prosthetic devices, implants and grafts) device complication 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004500/ScoringFiles/PGS004500.txt.gz
PGS004570
(meta.T84.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 T84 (Complications of internal orthopaedic prosthetic devices, implants and grafts) device complication 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004570/ScoringFiles/PGS004570.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM020615 PGS004500
(disease.T84.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: T84 (Complications of internal orthopaedic prosthetic devices, implants and grafts) OR: 1.12485 — — — —
PPM020685 PGS004570
(meta.T84.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: T84 (Complications of internal orthopaedic prosthetic devices, implants and grafts) OR: 1.14151 — — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011364 — — 56,192 individuals — European — UKB —