Trait: health satisfaction measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009724
Description Quantification of health satisfaction.
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001008
(GBE_QT_FC1002178)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Overall health rating health satisfaction measurement 10,464
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001008/ScoringFiles/PGS001008.txt.gz
PGS001401
(GBE_QT_FC1004548)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Health satisfaction health satisfaction measurement 1,814
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001401/ScoringFiles/PGS001401.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007254 PGS001401
(GBE_QT_FC1004548)
PSS007605|
European Ancestry|
26,439 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Health satisfaction : 0.00501 [0.00394, 0.00607]
Incremental R2 (full-covars): 0.00135
PGS R2 (no covariates): 0.00204 [0.00136, 0.00272]
age, sex, UKB array type, Genotype PCs
PPM007253 PGS001401
(GBE_QT_FC1004548)
PSS007604|
South Asian Ancestry|
4,984 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Health satisfaction : 0.01007 [0.00567, 0.01447]
Incremental R2 (full-covars): -0.00147
PGS R2 (no covariates): 0.00014 [-0.00038, 0.00065]
age, sex, UKB array type, Genotype PCs
PPM007252 PGS001401
(GBE_QT_FC1004548)
PSS007603|
European Ancestry|
10,834 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Health satisfaction : 0.01053 [0.00801, 0.01305]
Incremental R2 (full-covars): 0.00325
PGS R2 (no covariates): 0.00366 [0.00217, 0.00516]
age, sex, UKB array type, Genotype PCs
PPM007251 PGS001401
(GBE_QT_FC1004548)
PSS007602|
East Asian Ancestry|
773 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Health satisfaction : 0.01047 [0.00087, 0.02006]
Incremental R2 (full-covars): -0.00364
PGS R2 (no covariates): 0.0 [-0.0002, 0.00021]
age, sex, UKB array type, Genotype PCs
PPM007250 PGS001401
(GBE_QT_FC1004548)
PSS007601|
African Ancestry|
3,770 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Health satisfaction : 0.01436 [0.00862, 0.0201]
Incremental R2 (full-covars): -0.00107
PGS R2 (no covariates): 0.00031 [-0.00055, 0.00117]
age, sex, UKB array type, Genotype PCs
PPM007807 PGS001008
(GBE_QT_FC1002178)
PSS007595|
European Ancestry|
67,195 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Overall health rating : 0.02852 [0.02605, 0.031]
Incremental R2 (full-covars): 0.01945
PGS R2 (no covariates): 0.02062 [0.0185, 0.02274]
age, sex, UKB array type, Genotype PCs
PPM007806 PGS001008
(GBE_QT_FC1002178)
PSS007594|
South Asian Ancestry|
7,568 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Overall health rating : 0.02097 [0.01469, 0.02725]
Incremental R2 (full-covars): 0.00755
PGS R2 (no covariates): 0.00811 [0.00415, 0.01206]
age, sex, UKB array type, Genotype PCs
PPM007805 PGS001008
(GBE_QT_FC1002178)
PSS007593|
European Ancestry|
24,733 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Overall health rating : 0.03896 [0.03425, 0.04368]
Incremental R2 (full-covars): 0.01798
PGS R2 (no covariates): 0.02029 [0.01682, 0.02375]
age, sex, UKB array type, Genotype PCs
PPM007804 PGS001008
(GBE_QT_FC1002178)
PSS007592|
East Asian Ancestry|
1,636 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Overall health rating : 0.01726 [0.00503, 0.0295]
Incremental R2 (full-covars): -0.00444
PGS R2 (no covariates): 0.00157 [-0.00218, 0.00533]
age, sex, UKB array type, Genotype PCs
PPM007803 PGS001008
(GBE_QT_FC1002178)
PSS007591|
African Ancestry|
6,303 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Overall health rating : 0.02094 [0.01405, 0.02782]
Incremental R2 (full-covars): -0.00287
PGS R2 (no covariates): 0.00121 [-0.00048, 0.0029]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007591 6,303 individuals African unspecified UKB
PSS007592 1,636 individuals East Asian UKB
PSS007593 24,733 individuals European non-white British ancestry UKB
PSS007594 7,568 individuals South Asian UKB
PSS007595 67,195 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS007601 3,770 individuals African unspecified UKB
PSS007602 773 individuals East Asian UKB
PSS007603 10,834 individuals European non-white British ancestry UKB
PSS007604 4,984 individuals South Asian UKB
PSS007605 26,439 individuals European white British ancestry UKB Testing cohort (heldout set)