Trait: sun exposure measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0010729
Description Quantification of some aspect of exposure to incident light from the sun.
Trait category
Other measurement
Synonym sunlight exposure measurement
Mapped term PMID:25590795

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000980
(GBE_BIN_FC40002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (always) sun exposure measurement 2,594
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000980/ScoringFiles/PGS000980.txt.gz
PGS000982
(GBE_BIN_FC10002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (never / rarely) sun exposure measurement 1,141
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000982/ScoringFiles/PGS000982.txt.gz
PGS001535
(GBE_BIN_FC20002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun/uv protection (Sometimes) sun exposure measurement 309
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001535/ScoringFiles/PGS001535.txt.gz
PGS001993
(portability-PLR_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 17,282
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001993/ScoringFiles/PGS001993.txt.gz
PGS002210
(portability-ldpred2_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 821,654
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002210/ScoringFiles/PGS002210.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007688 PGS000980
(GBE_BIN_FC40002267)
 PSS003929|
African Ancestry|
6,273 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Always) — AUROC: 0.64912 [0.62037, 0.67788] R²: 0.04065
Incremental AUROC (full-covars): -0.00306
PGS R2 (no covariates): 0.00204
PGS AUROC (no covariates): 0.53089 [0.5, 0.56177]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007689 PGS000980
(GBE_BIN_FC40002267)
 PSS003930|
East Asian Ancestry|
1,652 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Always) — AUROC: 0.65218 [0.6125, 0.69186] R²: 0.0619
Incremental AUROC (full-covars): 0.00077
PGS R2 (no covariates): 0.00031
PGS AUROC (no covariates): 0.51403 [0.47131, 0.55674]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007690 PGS000980
(GBE_BIN_FC40002267)
 PSS003931|
European Ancestry|
24,868 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Always) — AUROC: 0.64596 [0.63785, 0.65407] R²: 0.06856
Incremental AUROC (full-covars): 0.0058
PGS R2 (no covariates): 0.01625
PGS AUROC (no covariates): 0.57105 [0.56245, 0.57964]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007691 PGS000980
(GBE_BIN_FC40002267)
 PSS003932|
South Asian Ancestry|
7,396 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Always) — AUROC: 0.63507 [0.60805, 0.6621] PGS R2 (no covariates): 0.00075
R²: 0.03575
Incremental AUROC (full-covars): -0.00025
PGS AUROC (no covariates): 0.51757 [0.4904, 0.54473]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007692 PGS000980
(GBE_BIN_FC40002267)
 PSS003933|
European Ancestry|
67,387 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Always) — AUROC: 0.63198 [0.62709, 0.63688] R²: 0.05677
Incremental AUROC (full-covars): 0.01257
PGS R2 (no covariates): 0.01131
PGS AUROC (no covariates): 0.55692 [0.55172, 0.56212]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007693 PGS000982
(GBE_BIN_FC10002267)
 PSS003716|
African Ancestry|
6,273 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Never/rarely) — AUROC: 0.64715 [0.63358, 0.66073] R²: 0.08512
Incremental AUROC (full-covars): -0.00513
PGS R2 (no covariates): 0.00843
PGS AUROC (no covariates): 0.53885 [0.52453, 0.55317]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007694 PGS000982
(GBE_BIN_FC10002267)
 PSS003717|
East Asian Ancestry|
1,652 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Never/rarely) — AUROC: 0.65071 [0.62093, 0.68049] R²: 0.08666
Incremental AUROC (full-covars): 0.00648
PGS R2 (no covariates): 0.00172
PGS AUROC (no covariates): 0.52165 [0.49059, 0.5527]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007695 PGS000982
(GBE_BIN_FC10002267)
 PSS003718|
European Ancestry|
24,868 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Never/rarely) — AUROC: 0.69857 [0.68892, 0.70822] R²: 0.09864
Incremental AUROC (full-covars): 0.00464
PGS R2 (no covariates): 0.01659
PGS AUROC (no covariates): 0.5824 [0.57161, 0.5932]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007696 PGS000982
(GBE_BIN_FC10002267)
 PSS003719|
South Asian Ancestry|
7,396 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Never/rarely) — AUROC: 0.61231 [0.59955, 0.62507] R²: 0.05067
Incremental AUROC (full-covars): -0.00303
PGS R2 (no covariates): 0.00035
PGS AUROC (no covariates): 0.51061 [0.49745, 0.52377]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM007697 PGS000982
(GBE_BIN_FC10002267)
 PSS003720|
European Ancestry|
67,387 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Never/rarely) — AUROC: 0.6934 [0.68657, 0.70024] R²: 0.08321
Incremental AUROC (full-covars): 0.01615
PGS R2 (no covariates): 0.00982
PGS AUROC (no covariates): 0.56628 [0.55865, 0.5739]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM005190 PGS001535
(GBE_BIN_FC20002267)
 PSS003830|
African Ancestry|
6,273 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Sometimes) — AUROC: 0.5906 [0.57555, 0.60565] R²: 0.03109
Incremental AUROC (full-covars): -0.00144
PGS R2 (no covariates): 0.00136
PGS AUROC (no covariates): 0.48531 [0.46984, 0.50078]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM005191 PGS001535
(GBE_BIN_FC20002267)
 PSS003831|
East Asian Ancestry|
1,652 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Sometimes) — AUROC: 0.55282 [0.52505, 0.58059] R²: 0.01545
Incremental AUROC (full-covars): 0.00303
PGS R2 (no covariates): 0.00113
PGS AUROC (no covariates): 0.51387 [0.48597, 0.54177]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM005192 PGS001535
(GBE_BIN_FC20002267)
 PSS003832|
European Ancestry|
24,868 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Sometimes) — AUROC: 0.59511 [0.58776, 0.60245] R²: 0.03349
Incremental AUROC (full-covars): 0.0029
PGS R2 (no covariates): 0.00751
PGS AUROC (no covariates): 0.54353 [0.53602, 0.55103]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM005193 PGS001535
(GBE_BIN_FC20002267)
 PSS003833|
South Asian Ancestry|
7,396 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Sometimes) — AUROC: 0.55494 [0.54118, 0.5687] R²: 0.01063
Incremental AUROC (full-covars): -0.00239
PGS R2 (no covariates): 0.00017
PGS AUROC (no covariates): 0.49173 [0.47787, 0.50558]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM005194 PGS001535
(GBE_BIN_FC20002267)
 PSS003834|
European Ancestry|
67,387 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Use of sun/uv protection (Sometimes) — AUROC: 0.59313 [0.58866, 0.5976] R²: 0.03328
Incremental AUROC (full-covars): 0.00692
PGS R2 (no covariates): 0.00443
PGS AUROC (no covariates): 0.53162 [0.52709, 0.53614]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM010819 PGS001993
(portability-PLR_more_sunscreen)
 PSS009476|
European Ancestry|
19,837 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.1345 [0.1208, 0.1482] sex, age, birth date, deprivation index, 16 PCs —
PPM010820 PGS001993
(portability-PLR_more_sunscreen)
 PSS009250|
European Ancestry|
4,075 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0842 [0.0536, 0.1147] sex, age, birth date, deprivation index, 16 PCs —
PPM010822 PGS001993
(portability-PLR_more_sunscreen)
 PSS008578|
Greater Middle Eastern Ancestry|
1,095 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0891 [0.0295, 0.1481] sex, age, birth date, deprivation index, 16 PCs —
PPM010823 PGS001993
(portability-PLR_more_sunscreen)
 PSS008356|
South Asian Ancestry|
5,836 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0425 [0.0168, 0.0681] sex, age, birth date, deprivation index, 16 PCs —
PPM010824 PGS001993
(portability-PLR_more_sunscreen)
 PSS008133|
East Asian Ancestry|
1,733 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.049 [0.0016, 0.0961] sex, age, birth date, deprivation index, 16 PCs —
PPM010825 PGS001993
(portability-PLR_more_sunscreen)
 PSS007920|
African Ancestry|
2,375 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0296 [-0.0108, 0.0699] sex, age, birth date, deprivation index, 16 PCs —
PPM010826 PGS001993
(portability-PLR_more_sunscreen)
 PSS009024|
African Ancestry|
3,660 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0233 [-0.0092, 0.0558] sex, age, birth date, deprivation index, 16 PCs —
PPM010821 PGS001993
(portability-PLR_more_sunscreen)
 PSS008804|
European Ancestry|
6,569 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0951 [0.0711, 0.1191] sex, age, birth date, deprivation index, 16 PCs —
PPM012527 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS009476|
European Ancestry|
19,837 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.15 [0.1363, 0.1636] sex, age, birth date, deprivation index, 16 PCs —
PPM012528 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS009250|
European Ancestry|
4,075 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0944 [0.0638, 0.1248] sex, age, birth date, deprivation index, 16 PCs —
PPM012529 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS008804|
European Ancestry|
6,569 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.1201 [0.0962, 0.1439] sex, age, birth date, deprivation index, 16 PCs —
PPM012530 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS008578|
Greater Middle Eastern Ancestry|
1,095 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.1117 [0.0522, 0.1703] sex, age, birth date, deprivation index, 16 PCs —
PPM012531 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS008356|
South Asian Ancestry|
5,836 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.051 [0.0253, 0.0766] sex, age, birth date, deprivation index, 16 PCs —
PPM012532 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS008133|
East Asian Ancestry|
1,733 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0415 [-0.0059, 0.0887] sex, age, birth date, deprivation index, 16 PCs —
PPM012533 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS007920|
African Ancestry|
2,375 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.013 [-0.0274, 0.0534] sex, age, birth date, deprivation index, 16 PCs —
PPM012534 PGS002210
(portability-ldpred2_more_sunscreen)
 PSS009024|
African Ancestry|
3,660 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Use of sun/uv protection — — Partial Correlation (partial-r): 0.0304 [-0.0021, 0.0628] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008133 — — 1,733 individuals — East Asian China (East Asia) UKB —
PSS003929 — —
[
  • 366 cases
  • , 5,907 controls
]
 — African unspecified — UKB —
PSS003930 — —
[
  • 187 cases
  • , 1,465 controls
]
 — East Asian — UKB —
PSS003931 — —
[
  • 5,387 cases
  • , 19,481 controls
]
 — European non-white British ancestry UKB —
PSS003932 — —
[
  • 460 cases
  • , 6,936 controls
]
 — South Asian — UKB —
PSS003933 — —
[
  • 15,222 cases
  • , 52,165 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS008804 — — 6,569 individuals — European Italy (South Europe) UKB —
PSS007920 — — 2,375 individuals — African American or Afro-Caribbean Carribean UKB —
PSS003830 — —
[
  • 1,944 cases
  • , 4,329 controls
]
 — African unspecified — UKB —
PSS003831 — —
[
  • 762 cases
  • , 890 controls
]
 — East Asian — UKB —
PSS003832 — —
[
  • 8,425 cases
  • , 16,443 controls
]
 — European non-white British ancestry UKB —
PSS003833 — —
[
  • 2,556 cases
  • , 4,840 controls
]
 — South Asian — UKB —
PSS008578 — — 1,095 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS003834 — —
[
  • 23,767 cases
  • , 43,620 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS009476 — — 19,837 individuals — European UK (+ Ireland) UKB —
PSS003716 — —
[
  • 3,409 cases
  • , 2,864 controls
]
 — African unspecified — UKB —
PSS003717 — —
[
  • 469 cases
  • , 1,183 controls
]
 — East Asian — UKB —
PSS003718 — —
[
  • 2,951 cases
  • , 21,917 controls
]
 — European non-white British ancestry UKB —
PSS003719 — —
[
  • 3,696 cases
  • , 3,700 controls
]
 — South Asian — UKB —
PSS003720 — —
[
  • 5,808 cases
  • , 61,579 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS009250 — — 4,075 individuals — European Poland (NE Europe) UKB —
PSS008356 — — 5,836 individuals — South Asian India (South Asia) UKB —
PSS009024 — — 3,660 individuals — African unspecified Nigeria (West Africa) UKB —