Trait: Hematuria

Trait Information
Identifier HP_0000790
Description The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine). [HPO: curators]
Trait category
Other trait
Synonym Blood in urine
Mapped terms 4 mapped terms
  • MSH:D006417
  • SNOMEDCT_US:34436003
  • SNOMEDCT_US:53298000
  • UMLS:C0018965

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001863
(portability-PLR_593)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Hematuria Hematuria 794
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001863/ScoringFiles/PGS001863.txt.gz
PGS002074
(portability-ldpred2_593)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Hematuria Hematuria 664,167
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002074/ScoringFiles/PGS002074.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM009793 PGS001863
(portability-PLR_593)
PSS009338|
European Ancestry|
19,287 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.03 [0.0159, 0.0441] sex, age, birth date, deprivation index, 16 PCs
PPM009794 PGS001863
(portability-PLR_593)
PSS009112|
European Ancestry|
4,016 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0138 [-0.0172, 0.0448] sex, age, birth date, deprivation index, 16 PCs
PPM009795 PGS001863
(portability-PLR_593)
PSS008666|
European Ancestry|
6,420 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0214 [-0.0031, 0.0459] sex, age, birth date, deprivation index, 16 PCs
PPM009796 PGS001863
(portability-PLR_593)
PSS008440|
Greater Middle Eastern Ancestry|
1,159 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): -0.0225 [-0.0805, 0.0356] sex, age, birth date, deprivation index, 16 PCs
PPM009797 PGS001863
(portability-PLR_593)
PSS008220|
South Asian Ancestry|
6,067 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0329 [0.0077, 0.0581] sex, age, birth date, deprivation index, 16 PCs
PPM009798 PGS001863
(portability-PLR_593)
PSS008001|
East Asian Ancestry|
1,766 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0088 [-0.0382, 0.0557] sex, age, birth date, deprivation index, 16 PCs
PPM009799 PGS001863
(portability-PLR_593)
PSS007785|
African Ancestry|
2,389 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.027 [-0.0133, 0.0672] sex, age, birth date, deprivation index, 16 PCs
PPM009800 PGS001863
(portability-PLR_593)
PSS008889|
African Ancestry|
3,775 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0212 [-0.0107, 0.0532] sex, age, birth date, deprivation index, 16 PCs
PPM011453 PGS002074
(portability-ldpred2_593)
PSS009338|
European Ancestry|
19,287 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.033 [0.0189, 0.0471] sex, age, birth date, deprivation index, 16 PCs
PPM011454 PGS002074
(portability-ldpred2_593)
PSS009112|
European Ancestry|
4,016 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0196 [-0.0114, 0.0506] sex, age, birth date, deprivation index, 16 PCs
PPM011455 PGS002074
(portability-ldpred2_593)
PSS008666|
European Ancestry|
6,420 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0418 [0.0173, 0.0663] sex, age, birth date, deprivation index, 16 PCs
PPM011458 PGS002074
(portability-ldpred2_593)
PSS008001|
East Asian Ancestry|
1,766 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.028 [-0.019, 0.0748] sex, age, birth date, deprivation index, 16 PCs
PPM011459 PGS002074
(portability-ldpred2_593)
PSS007785|
African Ancestry|
2,389 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0395 sex, age, birth date, deprivation index, 16 PCs
PPM011460 PGS002074
(portability-ldpred2_593)
PSS008889|
African Ancestry|
3,775 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.0273 [-0.0047, 0.0593] sex, age, birth date, deprivation index, 16 PCs
PPM011456 PGS002074
(portability-ldpred2_593)
PSS008440|
Greater Middle Eastern Ancestry|
1,159 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): -0.0051 [-0.0632, 0.053] sex, age, birth date, deprivation index, 16 PCs
PPM011457 PGS002074
(portability-ldpred2_593)
PSS008220|
South Asian Ancestry|
6,067 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hematuria Partial Correlation (partial-r): 0.028 [0.0028, 0.0532] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007785 2,389 individuals African American or Afro-Caribbean Carribean UKB
PSS009112 4,016 individuals European Poland (NE Europe) UKB
PSS008440 1,159 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009338 19,287 individuals European UK (+ Ireland) UKB
PSS008666 6,420 individuals European Italy (South Europe) UKB
PSS008220 6,067 individuals South Asian India (South Asia) UKB
PSS008889 3,775 individuals African unspecified Nigeria (West Africa) UKB
PSS008001 1,766 individuals East Asian China (East Asia) UKB