Trait: ganglion or cyst of synovium/tendon/bursa

Trait Information
Identifier MONDO_0004874
Trait category
Other disease
Mapped terms 4 mapped terms
  • DOID:9754
  • ICD9:727.49
  • MEDGEN:578881
  • UMLS:C0349693

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001879
(portability-PLR_727.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ganglion and cyst of synovium, tendon, and bursa ganglion or cyst of synovium/tendon/bursa 210
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001879/ScoringFiles/PGS001879.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM009917 PGS001879
(portability-PLR_727.4)
 PSS009356|
European Ancestry|
18,953 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): 0.0188 [0.0046, 0.033] sex, age, birth date, deprivation index, 16 PCs —
PPM009918 PGS001879
(portability-PLR_727.4)
 PSS009130|
European Ancestry|
3,909 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): -0.0022 [-0.0337, 0.0292] sex, age, birth date, deprivation index, 16 PCs —
PPM009919 PGS001879
(portability-PLR_727.4)
 PSS008684|
European Ancestry|
6,366 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): -0.0003 [-0.0249, 0.0243] sex, age, birth date, deprivation index, 16 PCs —
PPM009920 PGS001879
(portability-PLR_727.4)
 PSS008458|
Greater Middle Eastern Ancestry|
1,137 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): -0.0036 [-0.0623, 0.0551] sex, age, birth date, deprivation index, 16 PCs —
PPM009921 PGS001879
(portability-PLR_727.4)
 PSS008238|
South Asian Ancestry|
5,964 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): 0.0056 [-0.0198, 0.031] sex, age, birth date, deprivation index, 16 PCs —
PPM009922 PGS001879
(portability-PLR_727.4)
 PSS008017|
East Asian Ancestry|
1,759 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): -0.0128 [-0.0598, 0.0342] sex, age, birth date, deprivation index, 16 PCs —
PPM009923 PGS001879
(portability-PLR_727.4)
 PSS007802|
African Ancestry|
2,358 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): -0.0261 [-0.0666, 0.0144] sex, age, birth date, deprivation index, 16 PCs —
PPM009924 PGS001879
(portability-PLR_727.4)
 PSS008906|
African Ancestry|
3,779 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ganglion and cyst of synovium, tendon, and bursa — — Partial Correlation (partial-r): 0.0184 [-0.0135, 0.0504] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008458 — — 1,137 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009130 — — 3,909 individuals — European Poland (NE Europe) UKB —
PSS009356 — — 18,953 individuals — European UK (+ Ireland) UKB —
PSS008684 — — 6,366 individuals — European Italy (South Europe) UKB —
PSS008238 — — 5,964 individuals — South Asian India (South Asia) UKB —
PSS008906 — — 3,779 individuals — African unspecified Nigeria (West Africa) UKB —
PSS008017 — — 1,759 individuals — East Asian China (East Asia) UKB —
PSS007802 — — 2,358 individuals — African American or Afro-Caribbean Carribean UKB —