Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002070
(portability-ldpred2_565.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Anal and rectal polyp polyp of rectum,
anal polyp		 584,133
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002070/ScoringFiles/PGS002070.txt.gz
PGS000703
(HC132)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Angina angina pectoris 183,692
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000703/ScoringFiles/PGS000703.txt.gz - Check Terms/Licenses
PGS001260
(GBE_HC132)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Angina angina pectoris 2,562
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001260/ScoringFiles/PGS001260.txt.gz
PGS005047
(Phe_411_3_ldpred_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005047/ScoringFiles/PGS005047.txt.gz
PGS005048
(Phe_411_3_ldpred_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005048/ScoringFiles/PGS005048.txt.gz
PGS005049
(Phe_411_3_ldpred_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005049/ScoringFiles/PGS005049.txt.gz
PGS005050
(Phe_411_3_ldpred_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005050/ScoringFiles/PGS005050.txt.gz
PGS005051
(Phe_411_3_ldpred_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005051/ScoringFiles/PGS005051.txt.gz
PGS005052
(Phe_411_3_ldpred_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,286,612
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005052/ScoringFiles/PGS005052.txt.gz
PGS005053
(Phe_411_3_prscs_AFRss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005053/ScoringFiles/PGS005053.txt.gz
PGS005054
(Phe_411_3_prscs_EURss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005054/ScoringFiles/PGS005054.txt.gz
PGS005055
(Phe_411_3_prscs_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005055/ScoringFiles/PGS005055.txt.gz
PGS005056
(Phe_411_3_prscs_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005056/ScoringFiles/PGS005056.txt.gz
PGS005057
(Phe_411_3_prscs_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005057/ScoringFiles/PGS005057.txt.gz
PGS005058
(Phe_411_3_prscs_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005058/ScoringFiles/PGS005058.txt.gz
PGS005059
(Phe_411_3_prscsx_METAweight)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Angina pectoris (PheCode 411.3) angina pectoris 1,273,891
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005059/ScoringFiles/PGS005059.txt.gz
PGS001261
(GBE_HC937)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Angina pectoris (time-to-event) angina pectoris 2,524
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001261/ScoringFiles/PGS001261.txt.gz
PGS001241
(GBE_INI3143)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankle spacing width anthropometric measurement 21,694
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001241/ScoringFiles/PGS001241.txt.gz
PGS001887
(portability-PLR_ankle_spacing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankle spacing width anthropometric measurement 89,827
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001887/ScoringFiles/PGS001887.txt.gz
PGS002100
(portability-ldpred2_ankle_spacing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankle spacing width anthropometric measurement 917,925
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002100/ScoringFiles/PGS002100.txt.gz
PGS003490
(cont-decay-ankle_spacing)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Ankle spacing width body weights and measures 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003490/ScoringFiles/PGS003490.txt.gz
PGS004412
(X3143.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Ankle spacing width body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004412/ScoringFiles/PGS004412.txt.gz
PGS001242
(GBE_INI4100)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankle spacing width (L) anthropometric measurement 13,416
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001242/ScoringFiles/PGS001242.txt.gz
PGS004416
(X4100.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Ankle spacing width (left) body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004416/ScoringFiles/PGS004416.txt.gz
PGS001243
(GBE_INI4119)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankle spacing width (R) anthropometric measurement 15,134
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001243/ScoringFiles/PGS001243.txt.gz
PGS004421
(X4119.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Ankle spacing width (right) body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004421/ScoringFiles/PGS004421.txt.gz
PGS001267
(GBE_HC422)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001267/ScoringFiles/PGS001267.txt.gz
PGS001876
(portability-PLR_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 85
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001876/ScoringFiles/PGS001876.txt.gz
PGS002089
(portability-ldpred2_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 22,026
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002089/ScoringFiles/PGS002089.txt.gz
PGS003420
(PRS100_PRScs)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003420/ScoringFiles/PGS003420.txt.gz
PGS003421
(PRS16_C+T)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003421/ScoringFiles/PGS003421.txt.gz
PGS003422
(PRS16_PRSice2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003422/ScoringFiles/PGS003422.txt.gz
PGS003423
(PRS100_Lassosum)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003423/ScoringFiles/PGS003423.txt.gz
PGS003424
(PRS100_LDpred2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003424/ScoringFiles/PGS003424.txt.gz
PGS001268
(GBE_HC1242)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankylosing spondylitis (time-to-event) ankylosing spondylitis 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001268/ScoringFiles/PGS001268.txt.gz
PGS000353
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000353/ScoringFiles/PGS000353.txt.gz
PGS000354
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_PRS-CS_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 1,118,667
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000354/ScoringFiles/PGS000354.txt.gz
PGS000355
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000355/ScoringFiles/PGS000355.txt.gz
PGS000356
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 179
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000356/ScoringFiles/PGS000356.txt.gz
PGS001888
(portability-PLR_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 74,596
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001888/ScoringFiles/PGS001888.txt.gz
PGS002101
(portability-ldpred2_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 681,234
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002101/ScoringFiles/PGS002101.txt.gz
PGS003491
(cont-decay-apoA)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Apolipoprotein A apolipoprotein A-IV measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003491/ScoringFiles/PGS003491.txt.gz
PGS000671
(snpnet.Apolipoprotein_A)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Apolipoprotein A [g/L] apolipoprotein A 1 measurement 19,324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000671/ScoringFiles/PGS000671.txt.gz - Check Terms/Licenses
PGS001889
(portability-PLR_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 16,952
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001889/ScoringFiles/PGS001889.txt.gz
PGS002102
(portability-ldpred2_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 315,483
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002102/ScoringFiles/PGS002102.txt.gz
PGS003492
(cont-decay-apoB)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Apolipoprotein B apolipoprotein B measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003492/ScoringFiles/PGS003492.txt.gz
PGS000672
(snpnet.Apolipoprotein_B_adjstatins)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Apolipoprotein B [g/L] (statin adjusted) apolipoprotein B measurement 18,666
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000672/ScoringFiles/PGS000672.txt.gz - Check Terms/Licenses
PGS001786
(1kgeur_gbmi_leaveUKBBout_Appendectomy_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Appendectomy appendectomy 899,660
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001786/ScoringFiles/PGS001786.txt.gz
PGS001853
(portability-PLR_540)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Appendiceal conditions disorder of appendix 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001853/ScoringFiles/PGS001853.txt.gz
PGS002064
(portability-ldpred2_540)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Appendiceal conditions disorder of appendix 497,422
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002064/ScoringFiles/PGS002064.txt.gz
Showing 201 to 250 of 5022 rows