Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003974
(AFR_without-UKB_LDL)
 PGP000514 |
Hassanin E et al. Front Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 886,257
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003974/ScoringFiles/PGS003974.txt.gz
PGS003975
(EAS_without-UKB_LDL)
 PGP000514 |
Hassanin E et al. Front Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 862,971
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003975/ScoringFiles/PGS003975.txt.gz
PGS003976
(EUR_without-UKB_LDL)
 PGP000514 |
Hassanin E et al. Front Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 821,134
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003976/ScoringFiles/PGS003976.txt.gz
PGS003977
(SAS_without-UKB_LDL)
 PGP000514 |
Hassanin E et al. Front Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 826,248
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003977/ScoringFiles/PGS003977.txt.gz
PGS003978
(meta_without-UKB_LDL)
 PGP000514 |
Hassanin E et al. Front Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 348,056
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003978/ScoringFiles/PGS003978.txt.gz
PGS003979
(CRC_PRSCS)
 PGP000515 |
Tamlander M et al. Br J Cancer (2023)
 Colorectal cancer colorectal carcinoma 1,088,133
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003979/ScoringFiles/PGS003979.txt.gz
PGS003980
(dbslmm.auto.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 1,039,020
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003980/ScoringFiles/PGS003980.txt.gz
PGS003981
(dbslmm.auto.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 1,103,311
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003981/ScoringFiles/PGS003981.txt.gz
PGS003982
(dbslmm.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,071,764
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003982/ScoringFiles/PGS003982.txt.gz
PGS003983
(dbslmm.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,137,459
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003983/ScoringFiles/PGS003983.txt.gz
PGS003984
(dbslmm.auto.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 1,121,845
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003984/ScoringFiles/PGS003984.txt.gz
PGS003985
(dbslmm.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,139,671
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003985/ScoringFiles/PGS003985.txt.gz
PGS003986
(dbslmm.auto.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,138,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003986/ScoringFiles/PGS003986.txt.gz
PGS003987
(dbslmm.auto.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 1,009,642
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003987/ScoringFiles/PGS003987.txt.gz
PGS003988
(dbslmm.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,141,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003988/ScoringFiles/PGS003988.txt.gz
PGS003989
(dbslmm.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,141,637
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003989/ScoringFiles/PGS003989.txt.gz
PGS003990
(dbslmm.auto.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 1,005,456
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003990/ScoringFiles/PGS003990.txt.gz
PGS003991
(dbslmm.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 1,005,456
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003991/ScoringFiles/PGS003991.txt.gz
PGS003992
(dbslmm.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 1,136,212
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003992/ScoringFiles/PGS003992.txt.gz
PGS003993
(dbslmm.auto.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 63,182
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003993/ScoringFiles/PGS003993.txt.gz
PGS003994
(dbslmm.auto.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 778,205
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003994/ScoringFiles/PGS003994.txt.gz
PGS003995
(dbslmm.auto.GCST90018959.Height)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Height body height 1,119,867
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003995/ScoringFiles/PGS003995.txt.gz
PGS003996
(lassosum.auto.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 16,785
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003996/ScoringFiles/PGS003996.txt.gz
PGS003997
(lassosum.auto.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 8,406
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003997/ScoringFiles/PGS003997.txt.gz
PGS003998
(lassosum.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 5,548
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003998/ScoringFiles/PGS003998.txt.gz
PGS003999
(lassosum.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 13,086
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003999/ScoringFiles/PGS003999.txt.gz
PGS004000
(lassosum.auto.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 2,371
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004000/ScoringFiles/PGS004000.txt.gz
PGS004001
(lassosum.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 26,873
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004001/ScoringFiles/PGS004001.txt.gz
PGS004002
(lassosum.auto.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 7,708
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004002/ScoringFiles/PGS004002.txt.gz
PGS004003
(lassosum.auto.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 4,697
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004003/ScoringFiles/PGS004003.txt.gz
PGS004004
(lassosum.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 15,373
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004004/ScoringFiles/PGS004004.txt.gz
PGS004005
(lassosum.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 15,373
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004005/ScoringFiles/PGS004005.txt.gz
PGS004006
(lassosum.auto.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 19,101
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004006/ScoringFiles/PGS004006.txt.gz
PGS004007
(lassosum.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 19,101
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004007/ScoringFiles/PGS004007.txt.gz
PGS004008
(lassosum.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 5,663
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004008/ScoringFiles/PGS004008.txt.gz
PGS004009
(lassosum.auto.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 4,031
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004009/ScoringFiles/PGS004009.txt.gz
PGS004010
(lassosum.auto.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 27,045
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004010/ScoringFiles/PGS004010.txt.gz
PGS004011
(lassosum.auto.GCST90018959.Height)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Height body height 315,596
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004011/ScoringFiles/PGS004011.txt.gz
PGS004012
(lassosum.CV.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 437,695
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004012/ScoringFiles/PGS004012.txt.gz
PGS004013
(lassosum.CV.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 22,690
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004013/ScoringFiles/PGS004013.txt.gz
PGS004014
(lassosum.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 95,649
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004014/ScoringFiles/PGS004014.txt.gz
PGS004015
(lassosum.CV.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 65,138
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004015/ScoringFiles/PGS004015.txt.gz
PGS004016
(lassosum.CV.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 88,605
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004016/ScoringFiles/PGS004016.txt.gz
PGS004017
(lassosum.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 88,605
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004017/ScoringFiles/PGS004017.txt.gz
PGS004018
(lassosum.CV.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 100,595
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004018/ScoringFiles/PGS004018.txt.gz
PGS004019
(lassosum.CV.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 56,575
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004019/ScoringFiles/PGS004019.txt.gz
PGS004020
(lassosum.CV.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 6,682
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004020/ScoringFiles/PGS004020.txt.gz
PGS004021
(lassosum.CV.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 315,740
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004021/ScoringFiles/PGS004021.txt.gz
PGS004022
(ldpred2.auto.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 919,377
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004022/ScoringFiles/PGS004022.txt.gz
PGS004023
(ldpred2.auto.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 1,018,068
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004023/ScoringFiles/PGS004023.txt.gz
Showing 3901 to 3950 of 5091 rows