Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001267
(GBE_HC422)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001267/ScoringFiles/PGS001267.txt.gz
PGS001876
(portability-PLR_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 85
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001876/ScoringFiles/PGS001876.txt.gz
PGS002089
(portability-ldpred2_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 22,026
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002089/ScoringFiles/PGS002089.txt.gz
PGS003420
(PRS100_PRScs)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003420/ScoringFiles/PGS003420.txt.gz
PGS003421
(PRS16_C+T)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003421/ScoringFiles/PGS003421.txt.gz
PGS003422
(PRS16_PRSice2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003422/ScoringFiles/PGS003422.txt.gz
PGS003423
(PRS100_Lassosum)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003423/ScoringFiles/PGS003423.txt.gz
PGS003424
(PRS100_LDpred2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003424/ScoringFiles/PGS003424.txt.gz
PGS001268
(GBE_HC1242)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankylosing spondylitis (time-to-event) ankylosing spondylitis 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001268/ScoringFiles/PGS001268.txt.gz
PGS000353
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000353/ScoringFiles/PGS000353.txt.gz
PGS000354
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_PRS-CS_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 1,118,667
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000354/ScoringFiles/PGS000354.txt.gz
PGS000355
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000355/ScoringFiles/PGS000355.txt.gz
PGS000356
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Any cancer cancer 179
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000356/ScoringFiles/PGS000356.txt.gz
PGS001888
(portability-PLR_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 74,596
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001888/ScoringFiles/PGS001888.txt.gz
PGS002101
(portability-ldpred2_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 681,234
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002101/ScoringFiles/PGS002101.txt.gz
PGS003491
(cont-decay-apoA)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Apolipoprotein A apolipoprotein A-IV measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003491/ScoringFiles/PGS003491.txt.gz
PGS000671
(snpnet.Apolipoprotein_A)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Apolipoprotein A [g/L] apolipoprotein A 1 measurement 19,324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000671/ScoringFiles/PGS000671.txt.gz - Check Terms/Licenses
PGS001889
(portability-PLR_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 16,952
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001889/ScoringFiles/PGS001889.txt.gz
PGS002102
(portability-ldpred2_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 315,483
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002102/ScoringFiles/PGS002102.txt.gz
PGS003492
(cont-decay-apoB)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Apolipoprotein B apolipoprotein B measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003492/ScoringFiles/PGS003492.txt.gz
PGS000672
(snpnet.Apolipoprotein_B_adjstatins)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Apolipoprotein B [g/L] (statin adjusted) apolipoprotein B measurement 18,666
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000672/ScoringFiles/PGS000672.txt.gz - Check Terms/Licenses
PGS001786
(1kgeur_gbmi_leaveUKBBout_Appendectomy_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Appendectomy appendectomy 899,660
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001786/ScoringFiles/PGS001786.txt.gz
PGS001853
(portability-PLR_540)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Appendiceal conditions disorder of appendix 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001853/ScoringFiles/PGS001853.txt.gz
PGS002064
(portability-ldpred2_540)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Appendiceal conditions disorder of appendix 497,422
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002064/ScoringFiles/PGS002064.txt.gz
PGS001165
(GBE_INI23125)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Arm fat free mass (L) lean body mass 30,360
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001165/ScoringFiles/PGS001165.txt.gz
PGS003920
(INI23125)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Arm fat-free mass (L) lean body mass 39,276
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003920/ScoringFiles/PGS003920.txt.gz
PGS004399
(X23125.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm fat-free mass (left) lean body mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004399/ScoringFiles/PGS004399.txt.gz
PGS001146
(GBE_INI23121)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Arm fat-free mass (R) fat body mass 29,063
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001146/ScoringFiles/PGS001146.txt.gz
PGS003917
(INI23121)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Arm fat-free mass (R) lean body mass 38,650
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003917/ScoringFiles/PGS003917.txt.gz
PGS004395
(X23121.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm fat-free mass (right) lean body mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004395/ScoringFiles/PGS004395.txt.gz
PGS001144
(GBE_INI23124)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Arm fat mass (L) fat body mass 23,676
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001144/ScoringFiles/PGS001144.txt.gz
PGS003919
(INI23124)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Arm fat mass (L) fat body mass 29,392
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003919/ScoringFiles/PGS003919.txt.gz
PGS004398
(X23124.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm fat mass (left) fat body mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004398/ScoringFiles/PGS004398.txt.gz
PGS001145
(GBE_INI23120)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Arm fat mass (R) fat body mass 23,528
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001145/ScoringFiles/PGS001145.txt.gz
PGS003916
(INI23120)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Arm fat mass (R) fat body mass 29,790
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003916/ScoringFiles/PGS003916.txt.gz
PGS004394
(X23120.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm fat mass (right) fat body mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004394/ScoringFiles/PGS004394.txt.gz
PGS003918
(INI23123)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Arm fat percentage (L) body fat percentage 32,450
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003918/ScoringFiles/PGS003918.txt.gz
PGS004397
(X23123.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm fat percentage (left) body fat percentage 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004397/ScoringFiles/PGS004397.txt.gz
PGS001106
(GBE_INI23119)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Arm fat percentage (R) body fat percentage 23,943
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001106/ScoringFiles/PGS001106.txt.gz
PGS003915
(INI23119)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Arm fat percentage (R) body fat percentage 32,448
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003915/ScoringFiles/PGS003915.txt.gz
PGS004393
(X23119.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm fat percentage (right) body fat percentage 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004393/ScoringFiles/PGS004393.txt.gz
PGS004400
(X23126.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm predicted mass (left) body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004400/ScoringFiles/PGS004400.txt.gz
PGS004396
(X23122.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Arm predicted mass (right) body weights and measures 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004396/ScoringFiles/PGS004396.txt.gz
PGS001135
(GBE_HC78)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Arthritis (nos) arthritis 1,028
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001135/ScoringFiles/PGS001135.txt.gz
PGS002236
(PRS_AsAoD)
 PGP000268 |
Tcheandjieu C et al. Nat Genet (2022)
 Ascending aorta diameter (MRI-derived) aortic measurement 92,299
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002236/ScoringFiles/PGS002236.txt.gz
PGS002267
(PRS89_AA)
 PGP000296 |
Pirruccello JP et al. Nat Genet (2021)
 Ascending thoracic aortic diameter cardiovascular disease biomarker measurement,
aortic measurement		 89
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002267/ScoringFiles/PGS002267.txt.gz
PGS001941
(portability-PLR_log_AST)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Aspartate aminotransferase level aspartate aminotransferase measurement 33,498
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001941/ScoringFiles/PGS001941.txt.gz
PGS002159
(portability-ldpred2_log_AST)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Aspartate aminotransferase level aspartate aminotransferase measurement 716,914
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002159/ScoringFiles/PGS002159.txt.gz
PGS003343
(CVGRS_AST)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Aspartate aminotransferase level aspartate aminotransferase measurement 54
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003343/ScoringFiles/PGS003343.txt.gz
PGS003352
(ALLGRS_AST)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Aspartate aminotransferase level aspartate aminotransferase measurement 56
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003352/ScoringFiles/PGS003352.txt.gz
Showing 201 to 250 of 4735 rows