Trait: intelligence

Experimental Factor Ontology (EFO) Information
Identifier EFO_0004337
Description The ability to learn and to deal with new situations and to deal effectively with tasks involving abstractions.
Trait category
Biological process
Synonyms 3 synonyms
  • cognitive ability
  • general cognitive ability
  • general cognitive function
Mapped terms 2 mapped terms
  • MeSH:D007360
  • SNOMEDCT:22851009

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001232
(GBE_INI20016)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Fluid intelligence score intelligence 10,055
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001232/ScoringFiles/PGS001232.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008669 PGS001232
(GBE_INI20016)
PSS004891|
African Ancestry|
3,281 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Fluid intelligence score : 0.01453 [0.00875, 0.0203]
Incremental R2 (full-covars): -0.01682
PGS R2 (no covariates): 0.00026 [-0.00053, 0.00105]
age, sex, UKB array type, Genotype PCs
PPM008670 PGS001232
(GBE_INI20016)
PSS004892|
East Asian Ancestry|
716 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Fluid intelligence score : 0.06194 [0.03982, 0.08407]
Incremental R2 (full-covars): -0.023
PGS R2 (no covariates): 0.00235 [-0.00223, 0.00694]
age, sex, UKB array type, Genotype PCs
PPM008671 PGS001232
(GBE_INI20016)
PSS004893|
European Ancestry|
10,867 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Fluid intelligence score : 0.12663 [0.11891, 0.13435]
Incremental R2 (full-covars): 0.02765
PGS R2 (no covariates): 0.03358 [0.02918, 0.03797]
age, sex, UKB array type, Genotype PCs
PPM008672 PGS001232
(GBE_INI20016)
PSS004894|
South Asian Ancestry|
3,933 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Fluid intelligence score : 0.04498 [0.03601, 0.05394]
Incremental R2 (full-covars): 0.01256
PGS R2 (no covariates): 0.01775 [0.01195, 0.02354]
age, sex, UKB array type, Genotype PCs
PPM008673 PGS001232
(GBE_INI20016)
PSS004895|
European Ancestry|
27,171 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Fluid intelligence score : 0.06613 [0.0625, 0.06975]
Incremental R2 (full-covars): 0.0502
PGS R2 (no covariates): 0.05073 [0.0475, 0.05395]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS004892 716 individuals East Asian UKB
PSS004893 10,867 individuals European non-white British ancestry UKB
PSS004894 3,933 individuals South Asian UKB
PSS004895 27,171 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS004891 3,281 individuals African unspecified UKB