Trait: heel bone mineral density

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009270
Description Quantification of the mineral density of the heel bone
Trait category
Other measurement
Mapped term PMID:28869591

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001037
(GBE_INI78)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Heel bone mineral density (BMD) T-score, automated heel bone mineral density 14,310
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001037/ScoringFiles/PGS001037.txt.gz
PGS001038
(GBE_INI4106)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Left heel bone mineral density (BMD) T-score, automated heel bone mineral density 9,275
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001038/ScoringFiles/PGS001038.txt.gz
PGS001039
(GBE_INI4125)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Right heel bone mineral density (BMD) T-score, automated heel bone mineral density 9,753
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001039/ScoringFiles/PGS001039.txt.gz
PGS001402
(GBE_INI3148)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Heel bone mineral density (BMD) heel bone mineral density 14,251
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001402/ScoringFiles/PGS001402.txt.gz
PGS001403
(GBE_INI4105)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Heel bone mineral density (BMD) (L) heel bone mineral density 8,285
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001403/ScoringFiles/PGS001403.txt.gz
PGS001404
(GBE_INI4124)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Heel bone mineral density (BMD) (R) heel bone mineral density 9,637
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001404/ScoringFiles/PGS001404.txt.gz
PGS001955
(portability-PLR_log_heel_BMD)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Heel bone mineral density (BMD) heel bone mineral density 73,565
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001955/ScoringFiles/PGS001955.txt.gz
PGS002173
(portability-ldpred2_log_heel_BMD)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Heel bone mineral density (BMD) heel bone mineral density 729,074
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002173/ScoringFiles/PGS002173.txt.gz
PGS002768
(BMD_prscs)
PGP000364 |
Mars N et al. Am J Hum Genet (2022)
Osteoporosis osteoporosis,
heel bone mineral density
1,091,549
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002768/ScoringFiles/PGS002768.txt.gz
PGS003535
(cont-decay-log_heel_BMD)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Heel bone mineral density (BMD) heel bone mineral density 979,739
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003535/ScoringFiles/PGS003535.txt.gz
PGS004411
(X78.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Heel bone mineral density (BMD) T-score, automated heel bone mineral density 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004411/ScoringFiles/PGS004411.txt.gz
PGS004415
(X3148.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Heel bone mineral density (BMD) heel bone mineral density 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004415/ScoringFiles/PGS004415.txt.gz
PGS004419
(X4105.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Heel bone mineral density (BMD) (left) heel bone mineral density 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004419/ScoringFiles/PGS004419.txt.gz
PGS004420
(X4106.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Heel bone mineral density (BMD) T-score, automated (left) heel bone mineral density 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004420/ScoringFiles/PGS004420.txt.gz
PGS004424
(X4124.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Heel bone mineral density (BMD) (right) heel bone mineral density 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004424/ScoringFiles/PGS004424.txt.gz
PGS004425
(X4125.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Heel bone mineral density (BMD) T-score, automated (right) heel bone mineral density 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004425/ScoringFiles/PGS004425.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007945 PGS001037
(GBE_INI78)
PSS007478|
European Ancestry|
12,376 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated : 0.1881 [0.17936, 0.19685]
Incremental R2 (full-covars): 0.13506
PGS R2 (no covariates): 0.13678 [0.12885, 0.14471]
age, sex, UKB array type, Genotype PCs
PPM007943 PGS001037
(GBE_INI78)
PSS007476|
African Ancestry|
2,253 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated : 0.0346 [0.02587, 0.04333]
Incremental R2 (full-covars): 0.01755
PGS R2 (no covariates): 0.01827 [0.01182, 0.02472]
age, sex, UKB array type, Genotype PCs
PPM007944 PGS001037
(GBE_INI78)
PSS007477|
East Asian Ancestry|
795 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated Incremental R2 (full-covars): 0.06623
: 0.09833 [0.07154, 0.12513]
PGS R2 (no covariates): 0.06929 [0.04608, 0.09251]
age, sex, UKB array type, Genotype PCs
PPM007946 PGS001037
(GBE_INI78)
PSS007479|
South Asian Ancestry|
2,312 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated : 0.10193 [0.08923, 0.11462]
Incremental R2 (full-covars): 0.06757
PGS R2 (no covariates): 0.07119 [0.06021, 0.08216]
age, sex, UKB array type, Genotype PCs
PPM007947 PGS001037
(GBE_INI78)
PSS007480|
European Ancestry|
38,834 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated : 0.19661 [0.19123, 0.20198]
Incremental R2 (full-covars): 0.1419
PGS R2 (no covariates): 0.14159 [0.13671, 0.14646]
age, sex, UKB array type, Genotype PCs
PPM007948 PGS001038
(GBE_INI4106)
PSS007296|
African Ancestry|
3,560 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (L) : 0.02571 [0.01812, 0.03331]
Incremental R2 (full-covars): 0.00529
PGS R2 (no covariates): 0.00688 [0.00288, 0.01089]
age, sex, UKB array type, Genotype PCs
PPM007949 PGS001038
(GBE_INI4106)
PSS007297|
East Asian Ancestry|
781 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (L) : 0.10298 [0.0757, 0.13026]
Incremental R2 (full-covars): 0.08297
PGS R2 (no covariates): 0.082 [0.05709, 0.10691]
age, sex, UKB array type, Genotype PCs
PPM007950 PGS001038
(GBE_INI4106)
PSS007298|
European Ancestry|
10,636 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (L) : 0.17491 [0.16634, 0.18348]
Incremental R2 (full-covars): 0.11202
PGS R2 (no covariates): 0.11274 [0.10534, 0.12014]
age, sex, UKB array type, Genotype PCs
PPM007951 PGS001038
(GBE_INI4106)
PSS007299|
South Asian Ancestry|
5,043 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (L) : 0.08123 [0.06963, 0.09282]
Incremental R2 (full-covars): 0.05296
PGS R2 (no covariates): 0.05415 [0.04441, 0.0639]
age, sex, UKB array type, Genotype PCs
PPM007952 PGS001038
(GBE_INI4106)
PSS007300|
European Ancestry|
25,716 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (L) : 0.17984 [0.17459, 0.18509]
Incremental R2 (full-covars): 0.11708
PGS R2 (no covariates): 0.11589 [0.11134, 0.12043]
age, sex, UKB array type, Genotype PCs
PPM007953 PGS001039
(GBE_INI4125)
PSS007326|
African Ancestry|
3,592 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (R) : 0.02463 [0.01719, 0.03207]
Incremental R2 (full-covars): 0.00616
PGS R2 (no covariates): 0.00698 [0.00294, 0.01101]
age, sex, UKB array type, Genotype PCs
PPM007954 PGS001039
(GBE_INI4125)
PSS007327|
East Asian Ancestry|
782 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (R) : 0.09885 [0.072, 0.1257]
Incremental R2 (full-covars): 0.07541
PGS R2 (no covariates): 0.07555 [0.05147, 0.09963]
age, sex, UKB array type, Genotype PCs
PPM007955 PGS001039
(GBE_INI4125)
PSS007328|
European Ancestry|
10,633 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (R) : 0.1752 [0.16663, 0.18378]
Incremental R2 (full-covars): 0.11145
PGS R2 (no covariates): 0.11271 [0.10531, 0.12011]
age, sex, UKB array type, Genotype PCs
PPM007956 PGS001039
(GBE_INI4125)
PSS007329|
South Asian Ancestry|
5,041 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (R) : 0.08262 [0.07095, 0.0943]
Incremental R2 (full-covars): 0.05817
PGS R2 (no covariates): 0.05815 [0.0481, 0.06821]
age, sex, UKB array type, Genotype PCs
PPM007957 PGS001039
(GBE_INI4125)
PSS007330|
European Ancestry|
25,728 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (R) : 0.19359 [0.18823, 0.19894]
Incremental R2 (full-covars): 0.1242
PGS R2 (no covariates): 0.12266 [0.11802, 0.1273]
age, sex, UKB array type, Genotype PCs
PPM007080 PGS001402
(GBE_INI3148)
PSS007241|
African Ancestry|
2,248 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) : 0.03461 [0.02588, 0.04334]
Incremental R2 (full-covars): 0.01792
PGS R2 (no covariates): 0.01849 [0.012, 0.02498]
age, sex, UKB array type, Genotype PCs
PPM007081 PGS001402
(GBE_INI3148)
PSS007242|
East Asian Ancestry|
794 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) : 0.0956 [0.0691, 0.1221]
Incremental R2 (full-covars): 0.06421
PGS R2 (no covariates): 0.06783 [0.04482, 0.09083]
age, sex, UKB array type, Genotype PCs
PPM007082 PGS001402
(GBE_INI3148)
PSS007243|
European Ancestry|
12,374 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) : 0.18897 [0.18022, 0.19773]
Incremental R2 (full-covars): 0.13548
PGS R2 (no covariates): 0.13714 [0.1292, 0.14508]
age, sex, UKB array type, Genotype PCs
PPM007083 PGS001402
(GBE_INI3148)
PSS007244|
South Asian Ancestry|
2,310 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) : 0.10415 [0.09135, 0.11695]
Incremental R2 (full-covars): 0.06926
PGS R2 (no covariates): 0.07321 [0.06211, 0.08432]
age, sex, UKB array type, Genotype PCs
PPM007084 PGS001402
(GBE_INI3148)
PSS007245|
European Ancestry|
38,814 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) : 0.19926 [0.19386, 0.20465]
Incremental R2 (full-covars): 0.14341
PGS R2 (no covariates): 0.14309 [0.1382, 0.14798]
age, sex, UKB array type, Genotype PCs
PPM007100 PGS001403
(GBE_INI4105)
PSS007291|
African Ancestry|
3,558 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (L) : 0.02599 [0.01836, 0.03363]
Incremental R2 (full-covars): 0.00518
PGS R2 (no covariates): 0.00667 [0.00273, 0.01062]
age, sex, UKB array type, Genotype PCs
PPM007101 PGS001403
(GBE_INI4105)
PSS007292|
East Asian Ancestry|
781 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (L) : 0.10653 [0.07889, 0.13417]
Incremental R2 (full-covars): 0.08652
PGS R2 (no covariates): 0.08516 [0.05986, 0.11046]
age, sex, UKB array type, Genotype PCs
PPM007102 PGS001403
(GBE_INI4105)
PSS007293|
European Ancestry|
10,626 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (L) : 0.17743 [0.16883, 0.18604]
Incremental R2 (full-covars): 0.11194
PGS R2 (no covariates): 0.11269 [0.10529, 0.12009]
age, sex, UKB array type, Genotype PCs
PPM007103 PGS001403
(GBE_INI4105)
PSS007294|
South Asian Ancestry|
5,037 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (L) : 0.08239 [0.07073, 0.09405]
Incremental R2 (full-covars): 0.05357
PGS R2 (no covariates): 0.05487 [0.04506, 0.06467]
age, sex, UKB array type, Genotype PCs
PPM007104 PGS001403
(GBE_INI4105)
PSS007295|
European Ancestry|
25,706 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (L) : 0.18131 [0.17605, 0.18657]
Incremental R2 (full-covars): 0.11744
PGS R2 (no covariates): 0.11656 [0.11201, 0.12112]
age, sex, UKB array type, Genotype PCs
PPM007110 PGS001404
(GBE_INI4124)
PSS007321|
African Ancestry|
3,586 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (R) : 0.02449 [0.01707, 0.03191]
Incremental R2 (full-covars): 0.00554
PGS R2 (no covariates): 0.00662 [0.00269, 0.01055]
age, sex, UKB array type, Genotype PCs
PPM007111 PGS001404
(GBE_INI4124)
PSS007322|
East Asian Ancestry|
782 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (R) : 0.09993 [0.07297, 0.12689]
Incremental R2 (full-covars): 0.0765
PGS R2 (no covariates): 0.0766 [0.05238, 0.10082]
age, sex, UKB array type, Genotype PCs
PPM007112 PGS001404
(GBE_INI4124)
PSS007323|
European Ancestry|
10,627 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (R) : 0.17605 [0.16746, 0.18463]
Incremental R2 (full-covars): 0.11134
PGS R2 (no covariates): 0.11225 [0.10487, 0.11964]
age, sex, UKB array type, Genotype PCs
PPM007113 PGS001404
(GBE_INI4124)
PSS007324|
South Asian Ancestry|
5,032 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (R) : 0.08461 [0.07282, 0.0964]
Incremental R2 (full-covars): 0.05881
PGS R2 (no covariates): 0.05872 [0.04862, 0.06882]
age, sex, UKB array type, Genotype PCs
PPM007114 PGS001404
(GBE_INI4124)
PSS007325|
European Ancestry|
25,715 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Heel bone mineral density (BMD) (R) : 0.196 [0.19063, 0.20138]
Incremental R2 (full-covars): 0.12507
PGS R2 (no covariates): 0.12352 [0.11887, 0.12817]
age, sex, UKB array type, Genotype PCs
PPM010515 PGS001955
(portability-PLR_log_heel_BMD)
PSS009446|
European Ancestry|
11,484 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.4537 [0.4391, 0.4682] sex, age, birth date, deprivation index, 16 PCs
PPM010516 PGS001955
(portability-PLR_log_heel_BMD)
PSS009220|
European Ancestry|
2,146 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.4397 [0.4048, 0.4734] sex, age, birth date, deprivation index, 16 PCs
PPM010519 PGS001955
(portability-PLR_log_heel_BMD)
PSS008326|
South Asian Ancestry|
1,972 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.3477 [0.3081, 0.3861] sex, age, birth date, deprivation index, 16 PCs
PPM010520 PGS001955
(portability-PLR_log_heel_BMD)
PSS008103|
East Asian Ancestry|
820 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.3057 [0.2415, 0.3672] sex, age, birth date, deprivation index, 16 PCs
PPM010521 PGS001955
(portability-PLR_log_heel_BMD)
PSS007890|
African Ancestry|
790 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.1895 [0.1204, 0.2567] sex, age, birth date, deprivation index, 16 PCs
PPM010522 PGS001955
(portability-PLR_log_heel_BMD)
PSS008994|
African Ancestry|
1,406 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.1746 [0.1231, 0.2252] sex, age, birth date, deprivation index, 16 PCs
PPM010517 PGS001955
(portability-PLR_log_heel_BMD)
PSS008774|
European Ancestry|
3,461 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.3929 [0.3643, 0.4208] sex, age, birth date, deprivation index, 16 PCs
PPM010518 PGS001955
(portability-PLR_log_heel_BMD)
PSS008548|
Greater Middle Eastern Ancestry|
506 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.2944 [0.211, 0.3736] sex, age, birth date, deprivation index, 16 PCs
PPM012231 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS009446|
European Ancestry|
11,484 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.4429 [0.428, 0.4575] sex, age, birth date, deprivation index, 16 PCs
PPM012232 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS009220|
European Ancestry|
2,146 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.4242 [0.3886, 0.4584] sex, age, birth date, deprivation index, 16 PCs
PPM012233 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS008774|
European Ancestry|
3,461 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.384 [0.3551, 0.4121] sex, age, birth date, deprivation index, 16 PCs
PPM012234 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS008548|
Greater Middle Eastern Ancestry|
506 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.3123 [0.2297, 0.3904] sex, age, birth date, deprivation index, 16 PCs
PPM012235 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS008326|
South Asian Ancestry|
1,972 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.338 [0.2981, 0.3767] sex, age, birth date, deprivation index, 16 PCs
PPM012236 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS008103|
East Asian Ancestry|
820 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.285 [0.22, 0.3474] sex, age, birth date, deprivation index, 16 PCs
PPM012237 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS007890|
African Ancestry|
790 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.1699 [0.1005, 0.2377] sex, age, birth date, deprivation index, 16 PCs
PPM012238 PGS002173
(portability-ldpred2_log_heel_BMD)
PSS008994|
African Ancestry|
1,406 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Heel bone mineral density (BMD) Partial Correlation (partial-r): 0.1647 [0.113, 0.2154] sex, age, birth date, deprivation index, 16 PCs
PPM014968 PGS002768
(BMD_prscs)
PSS009939|
European Ancestry|
39,444 individuals
PGP000364 |
Mars N et al. Am J Hum Genet (2022)
Reported Trait: Osteoporosis OR: 1.31 [1.25, 1.38] age, sex, 10 PCs, technical covariates
PPM017631 PGS003535
(cont-decay-log_heel_BMD)
PSS010647|
European Ancestry|
3,384 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.15 sex, age, deprivation index, PC1-16
PPM017799 PGS003535
(cont-decay-log_heel_BMD)
PSS010227|
European Ancestry|
1,383 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.17 sex, age, deprivation index, PC1-16
PPM017883 PGS003535
(cont-decay-log_heel_BMD)
PSS010479|
South Asian Ancestry|
1,965 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.11 sex, age, deprivation index, PC1-16
PPM017967 PGS003535
(cont-decay-log_heel_BMD)
PSS010395|
East Asian Ancestry|
811 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.07 sex, age, deprivation index, PC1-16
PPM018051 PGS003535
(cont-decay-log_heel_BMD)
PSS010311|
African Ancestry|
786 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.02 sex, age, deprivation index, PC1-16
PPM018135 PGS003535
(cont-decay-log_heel_BMD)
PSS010731|
African Ancestry|
1,397 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.03 sex, age, deprivation index, PC1-16
PPM017463 PGS003535
(cont-decay-log_heel_BMD)
PSS010899|
European Ancestry|
11,350 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.2 sex, age, deprivation index, PC1-16
PPM017547 PGS003535
(cont-decay-log_heel_BMD)
PSS010815|
European Ancestry|
2,145 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.19 sex, age, deprivation index, PC1-16
PPM017715 PGS003535
(cont-decay-log_heel_BMD)
PSS010563|
Greater Middle Eastern Ancestry|
487 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Heel bone mineral density (BMD) partial-R2: 0.1 sex, age, deprivation index, PC1-16
PPM020526 PGS004411
(X78.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Heel bone mineral density (BMD) T-score, automated PGS R2 (no covariates): 0.30125
PPM020530 PGS004415
(X3148.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Heel bone mineral density (BMD) PGS R2 (no covariates): 0.30248
PPM020534 PGS004419
(X4105.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Heel bone mineral density (BMD) (left) PGS R2 (no covariates): 0.2483
PPM020535 PGS004420
(X4106.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (left) PGS R2 (no covariates): 0.24744
PPM020539 PGS004424
(X4124.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Heel bone mineral density (BMD) (right) PGS R2 (no covariates): 0.24863
PPM020540 PGS004425
(X4125.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Heel bone mineral density (BMD) T-score, automated (right) PGS R2 (no covariates): 0.24814

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008774 3,461 individuals European Italy (South Europe) UKB
PSS007241 2,248 individuals African unspecified UKB
PSS007242 794 individuals East Asian UKB
PSS007243 12,374 individuals European non-white British ancestry UKB
PSS007244 2,310 individuals South Asian UKB
PSS007245 38,814 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS007890 790 individuals African American or Afro-Caribbean Carribean UKB
PSS008994 1,406 individuals African unspecified Nigeria (West Africa) UKB
PSS008548 506 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS010815 2,145 individuals,
39.0 % Male samples
Mean = 54.3 years
Sd = 7.2 years
European Polish UKB
PSS009446 11,484 individuals European UK (+ Ireland) UKB
PSS010563 487 individuals,
65.0 % Male samples
Mean = 51.1 years
Sd = 7.6 years
Greater Middle Eastern (Middle Eastern, North African or Persian) Iranian UKB
PSS010311 786 individuals,
35.0 % Male samples
Mean = 52.2 years
Sd = 8.1 years
African American or Afro-Caribbean Caribbean UKB
PSS009939 39,444 individuals European
(Finnish)
FinnGen
PSS007291 3,558 individuals African unspecified UKB
PSS007292 781 individuals East Asian UKB
PSS007293 10,626 individuals European non-white British ancestry UKB
PSS007294 5,037 individuals South Asian UKB
PSS007295 25,706 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS007296 3,560 individuals African unspecified UKB
PSS007297 781 individuals East Asian UKB
PSS007298 10,636 individuals European non-white British ancestry UKB
PSS007299 5,043 individuals South Asian UKB
PSS007300 25,716 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS009220 2,146 individuals European Poland (NE Europe) UKB
PSS008326 1,972 individuals South Asian India (South Asia) UKB
PSS010731 1,397 individuals,
49.0 % Male samples
Mean = 51.9 years
Sd = 8.1 years
African unspecified Nigerian UKB
PSS010479 1,965 individuals,
55.0 % Male samples
Mean = 52.7 years
Sd = 8.2 years
South Asian Indian UKB
PSS010227 1,383 individuals,
46.0 % Male samples
Mean = 57.7 years
Sd = 7.1 years
European Ashkenazi UKB
PSS011364 56,192 individuals European UKB
PSS007321 3,586 individuals African unspecified UKB
PSS007322 782 individuals East Asian UKB
PSS007323 10,627 individuals European non-white British ancestry UKB
PSS007324 5,032 individuals South Asian UKB
PSS007325 25,715 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS007326 3,592 individuals African unspecified UKB
PSS007327 782 individuals East Asian UKB
PSS007328 10,633 individuals European non-white British ancestry UKB
PSS007329 5,041 individuals South Asian UKB
PSS007330 25,728 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS008103 820 individuals East Asian China (East Asia) UKB
PSS010647 3,384 individuals,
46.0 % Male samples
Mean = 54.5 years
Sd = 8.2 years
European Italian UKB
PSS010899 11,350 individuals,
46.0 % Male samples
Mean = 56.9 years
Sd = 7.8 years
European white British UKB
PSS007476 2,253 individuals African unspecified UKB
PSS007477 795 individuals East Asian UKB
PSS007478 12,376 individuals European non-white British ancestry UKB
PSS007479 2,312 individuals South Asian UKB
PSS007480 38,834 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS010395 811 individuals,
35.0 % Male samples
Mean = 51.9 years
Sd = 7.5 years
East Asian Chinese UKB