Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS002300
(PRS19_endometrial)
PGP000328 |
Choi J et al. Int J Cancer (2020)
Endometrial cancer endometrial cancer 19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002300/ScoringFiles/PGS002300.txt.gz
PGS002735
(PRS19)
PGP000344 |
Bafligil C et al. Genet Med (2022)
Endometrial cancer endometrial carcinoma 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002735/ScoringFiles/PGS002735.txt.gz
PGS002826
(ExPRSweb_Alcohol_20403_PT_MGI_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Alcohol consumption alcohol consumption measurement 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002826/ScoringFiles/PGS002826.txt.gz
PGS003176
(ExPRSweb_VitD_100021-irnt_PLINK_MGI_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Vitamin D vitamin D measurement 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003176/ScoringFiles/PGS003176.txt.gz
PGS003329
(PRS19_gout)
PGP000394 |
Sumpter NA et al. Arthritis Rheumatol (2022)
Gout gout 19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003329/ScoringFiles/PGS003329.txt.gz
PGS003653
(L_hippocampal_tail_UKBB_EUR_GWAS)
PGP000464 |
Liu N et al. Nat Genet (2023)
Left hippocampal tail volume hippocampal tail volume 19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003653/ScoringFiles/PGS003653.txt.gz
PGS003742
(PRS19_PC)
PGP000470 |
Xin J et al. EBioMedicine (2023)
Pancreatic cancer pancreatic neoplasm 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003742/ScoringFiles/PGS003742.txt.gz
PGS004250
(PRS19_pancreas)
PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
Pancreatic cancer pancreatic carcinoma 19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004250/ScoringFiles/PGS004250.txt.gz
PGS004325
(GRS19_LC)
PGP000559 |
Wang Y et al. Front Physiol (2023)
Lung cancer lung carcinoma 19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004325/ScoringFiles/PGS004325.txt.gz
PGS000032
(GRSB)
PGP000020 |
Vassy JL et al. Diabetes (2014)
Type 2 diabetes (based on SNPs involved in β-cell function) type 2 diabetes mellitus 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000032/ScoringFiles/PGS000032.txt.gz
PGS000425
(PRSWEB_PHECODE172.1_Melanoma-Ransohoff_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history) melanoma 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000425/ScoringFiles/PGS000425.txt.gz
PGS000426
(PRSWEB_PHECODE172.1_Melanoma-Ransohoff_P_5e-08_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history) melanoma 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000426/ScoringFiles/PGS000426.txt.gz
PGS000427
(PRSWEB_PHECODE172.1_Melanoma-Ransohoff_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history) melanoma 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000427/ScoringFiles/PGS000427.txt.gz
PGS000428
(PRSWEB_PHECODE172.1_Melanoma-Ransohoff_PT_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history) melanoma 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000428/ScoringFiles/PGS000428.txt.gz
PGS000480
(PRSWEB_PHECODE174.1_C50_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Breast cancer (female) breast carcinoma 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000480/ScoringFiles/PGS000480.txt.gz
PGS000542
(PRSWEB_PHECODE182_GWAS-Catalog-r2019-05-03-X182_PT_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of uterus uterine cancer 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000542/ScoringFiles/PGS000542.txt.gz
PGS000639
(PRSWEB_PHECODE201_GWAS-Catalog-r2019-05-03-X201_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Hodgkin's disease Hodgkins lymphoma 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000639/ScoringFiles/PGS000639.txt.gz
PGS000778
(PRSHCM)
PGP000182 |
Tadros R et al. Nat Genet (2021)
Hypertrophic cardiomyopathy hypertrophic cardiomyopathy 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000778/ScoringFiles/PGS000778.txt.gz
PGS002808
(PGS20_LC)
PGP000387 |
Qin N et al. Lancet Oncol (2022)
Lung cancer lung carcinoma 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002808/ScoringFiles/PGS002808.txt.gz
PGS004248
(PRS20_nhl)
PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
Non-Hodgkin's lymphoma non-Hodgkins lymphoma 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004248/ScoringFiles/PGS004248.txt.gz
PGS004256
(GenoBoost_rheumatoid_arthritis_1)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Rheumatoid arthritis rheumatoid arthritis 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004256/ScoringFiles/PGS004256.txt.gz
PGS004257
(GenoBoost_rheumatoid_arthritis_2)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Rheumatoid arthritis rheumatoid arthritis 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004257/ScoringFiles/PGS004257.txt.gz
PGS004258
(GenoBoost_rheumatoid_arthritis_3)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Rheumatoid arthritis rheumatoid arthritis 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004258/ScoringFiles/PGS004258.txt.gz
PGS004259
(GenoBoost_rheumatoid_arthritis_4)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Rheumatoid arthritis rheumatoid arthritis 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004259/ScoringFiles/PGS004259.txt.gz
PGS004270
(GenoBoost_inflammatory_bowel_disease_0)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Inflammatory bowel disease inflammatory bowel disease 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004270/ScoringFiles/PGS004270.txt.gz
PGS004271
(GenoBoost_inflammatory_bowel_disease_1)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Inflammatory bowel disease inflammatory bowel disease 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004271/ScoringFiles/PGS004271.txt.gz
PGS004285
(GenoBoost_alzheimer_s_disease_0)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Alzheimer's disease Alzheimer disease 20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004285/ScoringFiles/PGS004285.txt.gz
PGS004913
(PRSALC)
PGP000645 |
Schwantes-An TH et al. Hepatol Commun (2024)
Alcohol-associated liver cirrhosis alcoholic liver cirrhosis 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004913/ScoringFiles/PGS004913.txt.gz
PGS000053
(ALZ21_NIA-LOAD)
PGP000039 |
Tosto G et al. Neurology (2017)
Alzheimer's disease (late onset) late-onset Alzheimer's disease 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000053/ScoringFiles/PGS000053.txt.gz
PGS000054
(ALZ21_EFIGA)
PGP000039 |
Tosto G et al. Neurology (2017)
Alzheimer's disease (late onset) late-onset Alzheimer's disease 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000054/ScoringFiles/PGS000054.txt.gz
PGS000127
(GS-E-EUR)
PGP000064 |
Wheeler E et al. PLoS Med (2017)
HbA1c HbA1c measurement 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000127/ScoringFiles/PGS000127.txt.gz
PGS000147
(CRC21)
PGP000070 |
Ibáñez-Sanz G et al. Sci Rep (2017)
Colorectal cancer colorectal cancer 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000147/ScoringFiles/PGS000147.txt.gz
PGS000325
(GRS-JIA-Oli-20)
PGP000052 |
Cánovas R et al. Ann Rheum Dis (2020)
Oligoarthritis Juvenile Idiophatic Arthritis oligoarticular juvenile idiopathic arthritis 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000325/ScoringFiles/PGS000325.txt.gz
PGS000389
(PRSWEB_PHECODE165.1_GWAS-Catalog-r2019-05-03-X165.1_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Lung and bronchus cancer tracheal cancer,
bronchus cancer,
lung cancer
21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000389/ScoringFiles/PGS000389.txt.gz
PGS000390
(PRSWEB_PHECODE165.1_GWAS-Catalog-r2019-05-03-X165.1_P_5e-08_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Lung and bronchus cancer tracheal cancer,
bronchus cancer,
lung cancer
21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000390/ScoringFiles/PGS000390.txt.gz
PGS000414
(PRSWEB_PHECODE172.1_C3-MELANOMA-SKIN_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history) melanoma 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000414/ScoringFiles/PGS000414.txt.gz
PGS000544
(PRSWEB_PHECODE184.11_GWAS-Catalog-r2019-05-03-X184.11_P_5e-08_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of ovary ovarian neoplasm 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000544/ScoringFiles/PGS000544.txt.gz
PGS000545
(PRSWEB_PHECODE184.11_GWAS-Catalog-r2019-05-03-X184.11_PT_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of ovary ovarian neoplasm 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000545/ScoringFiles/PGS000545.txt.gz
PGS000559
(PRSWEB_PHECODE184.11_Phelan-SIOC_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of ovary ovarian neoplasm 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000559/ScoringFiles/PGS000559.txt.gz
PGS000560
(PRSWEB_PHECODE184.11_Phelan-SIOC_P_5e-08_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of ovary ovarian neoplasm 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000560/ScoringFiles/PGS000560.txt.gz
PGS000565
(PRSWEB_PHECODE185_20001-1044_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Prostate cancer prostate carcinoma 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000565/ScoringFiles/PGS000565.txt.gz
PGS000654
(PRSWEB_PHECODE204.4_GWAS-Catalog-r2019-05-03-X204.4_PT_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Multiple myeloma multiple myeloma 21
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000654/ScoringFiles/PGS000654.txt.gz
PGS000853
(T2D_Insulin_Secretion_2)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with insulin secretion) type 2 diabetes mellitus 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000853/ScoringFiles/PGS000853.txt.gz
PGS001097
(GBE_BIN_FC6001747)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Hair color, other hair colour measurement 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001097/ScoringFiles/PGS001097.txt.gz
PGS001779
(BRSprs)
PGP000260 |
Barc J et al. Nat Genet (2022)
Brugada syndrome Brugada syndrome 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001779/ScoringFiles/PGS001779.txt.gz
PGS002577
(repro_NumberChildrenEverBorn_Pooled.P+T.5e-08)
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Number of children ever born number of children ever born measurement 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002577/ScoringFiles/PGS002577.txt.gz
PGS003449
(PRS21_HL)
PGP000448 |
Berndt SI et al. Leukemia (2022)
Hodgkin lymphoma Hodgkins lymphoma 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003449/ScoringFiles/PGS003449.txt.gz
PGS003574
(GRS_Dementia21)
PGP000459 |
Mukadam N et al. PLoS One (2022)
Alzheimer's disease (late onset) Alzheimer disease 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003574/ScoringFiles/PGS003574.txt.gz
PGS004165
(PRS21_LC)
PGP000518 |
Wei X et al. Int J Cancer (2023)
Lung cancer lung carcinoma 21
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004165/ScoringFiles/PGS004165.txt.gz
PGS000083
(CC_Pancreas)
PGP000050 |
Graff RE et al. Nat Commun (2021)
Pancreatic cancer pancreatic carcinoma 22
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000083/ScoringFiles/PGS000083.txt.gz