Trait: rheumatoid arthritis

Experimental Factor Ontology (EFO) Information
Identifier EFO_0000685
Description A chronic, systemic autoimmune disorder characterized by inflammation in the synovial membranes and articular surfaces. It manifests primarily as a symmetric, erosive polyarthritis that spares the axial skeleton and is typically associated with the presence in the serum of rheumatoid factor. [NCIT: C2884]
Trait category
Immune system disorder
Synonyms 20 synonyms
  • Arthritis or polyarthritis, rheumatic
  • Arthritis, Rheumatoid
  • Chronic rheumatic arthritis
  • Proliferative arthritis
  • RA
  • RA - Rheumatoid arthritis
  • RhA - Rheumatoid arthritis
  • Rheumatic gout
  • Rheumatoid arthritis (disorder)
  • Rheumatoid arthritis NOS
  • Rheumatoid arthritis NOS (disorder)
  • Rheumatoid disease
  • arthritis or polyarthritis, rheumatic
  • arthritis, rheumatoid
  • atrophic Arthritis
  • atrophic arthritis
  • autoimmune arthritis
  • rheumatoid arthritis
  • rheumatoid arthritis, progression of
  • rheumatoid arthritis, susceptibility to
Mapped terms 18 mapped terms
  • DOID:7148
  • HP:0001370
  • ICD10:M05
  • ICD10:M06
  • ICD9:714.0
  • MESH:D001172
  • MONDO:0008383
  • MeSH:D001172
  • MedDRA:10037740
  • MedDRA:10039073
  • NCIT:C2884
  • NCIt:C2884
  • OMIM:180300
  • OMIM:604302
  • Orphanet:284130
  • SCTID:69896004
  • SNOMEDCT:69896004
  • UMLS:C0003873
Child trait(s) 4 child traits

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Note: This table shows all PGS for "rheumatoid arthritis" and any child terms of this trait in the EFO hierarchy by default.
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000194
(G-PROB_Rapos)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Rheumatoid arthritis (CCP-negative) ACPA-positive rheumatoid arthritis 250
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000194/ScoringFiles/PGS000194.txt.gz
PGS000195
(G-PROB_Raneg)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Rheumatoid arthritis (CCP-negative) ACPA-negative rheumatoid arthritis 250
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000195/ScoringFiles/PGS000195.txt.gz
PGS000198
(G-PROB_PsA)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Psoriatic arthritis psoriatic arthritis 250
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000198/ScoringFiles/PGS000198.txt.gz
PGS000342
(wGRS_PsA)
 PGP000111 |
Smith MP et al. J Psoriasis Psoriatic Arthritis (2020)
 Psoriatic arthritis psoriatic arthritis 11
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000342/ScoringFiles/PGS000342.txt.gz
PGS000343
(wGRS_PsA_HLA)
 PGP000111 |
Smith MP et al. J Psoriasis Psoriatic Arthritis (2020)
 Psoriatic arthritis psoriatic arthritis 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000343/ScoringFiles/PGS000343.txt.gz
PGS001267
(GBE_HC422)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001267/ScoringFiles/PGS001267.txt.gz
PGS001268
(GBE_HC1242)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ankylosing spondylitis (time-to-event) ankylosing spondylitis 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001268/ScoringFiles/PGS001268.txt.gz
PGS001287
(GBE_HC91)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Psoriatic arthropathy psoriatic arthritis 36
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001287/ScoringFiles/PGS001287.txt.gz
PGS001309
(GBE_HC1212)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other rheumatoid arthritis (time-to-event) rheumatoid arthritis 323
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001309/ScoringFiles/PGS001309.txt.gz
PGS001310
(GBE_HC430)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 175
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001310/ScoringFiles/PGS001310.txt.gz
PGS001311
(GBE_HC1211)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Seropositive rheumatoid arthritis (time-to-event) rheumatoid arthritis 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001311/ScoringFiles/PGS001311.txt.gz
PGS001875
(portability-PLR_714.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 256
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001875/ScoringFiles/PGS001875.txt.gz
PGS001876
(portability-PLR_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 85
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001876/ScoringFiles/PGS001876.txt.gz
PGS002088
(portability-ldpred2_714.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 95,083
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002088/ScoringFiles/PGS002088.txt.gz
PGS002089
(portability-ldpred2_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 22,026
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002089/ScoringFiles/PGS002089.txt.gz
PGS002260
(PRS_RA)
 PGP000286 |
Honda S et al. Arthritis Rheumatol (2022)
 Rheumatoid arthritis rheumatoid arthritis 43,784
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002260/ScoringFiles/PGS002260.txt.gz
PGS002745
(metaPGS_RA)
 PGP000357 |
Ishigaki K et al. Nat Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 2,575
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002745/ScoringFiles/PGS002745.txt.gz
PGS002769
(Rheumatoid_arthritis_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Seropositive rheumatoid arthritis rheumatoid arthritis 1,083,565
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002769/ScoringFiles/PGS002769.txt.gz
PGS003420
(PRS100_PRScs)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003420/ScoringFiles/PGS003420.txt.gz
PGS003421
(PRS16_C+T)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003421/ScoringFiles/PGS003421.txt.gz
PGS003422
(PRS16_PRSice2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003422/ScoringFiles/PGS003422.txt.gz
PGS003423
(PRS100_Lassosum)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003423/ScoringFiles/PGS003423.txt.gz
PGS003424
(PRS100_LDpred2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003424/ScoringFiles/PGS003424.txt.gz
PGS003994
(dbslmm.auto.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 778,205
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003994/ScoringFiles/PGS003994.txt.gz
PGS004010
(lassosum.auto.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 27,045
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004010/ScoringFiles/PGS004010.txt.gz
PGS004021
(lassosum.CV.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 315,740
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004021/ScoringFiles/PGS004021.txt.gz
PGS004049
(ldpred2.CV.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 373,627
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004049/ScoringFiles/PGS004049.txt.gz
PGS004064
(megaprs.auto.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 402,214
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004064/ScoringFiles/PGS004064.txt.gz
PGS004079
(megaprs.CV.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 402,214
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004079/ScoringFiles/PGS004079.txt.gz
PGS004094
(prscs.auto.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 755,048
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004094/ScoringFiles/PGS004094.txt.gz
PGS004103
(prscs.CV.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 755,048
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004103/ScoringFiles/PGS004103.txt.gz
PGS004118
(pt_clump.auto.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 91
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004118/ScoringFiles/PGS004118.txt.gz
PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 155
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004133/ScoringFiles/PGS004133.txt.gz
PGS004148
(sbayesr.auto.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 671,211
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004148/ScoringFiles/PGS004148.txt.gz
PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Rheumatoid arthritis rheumatoid arthritis 778,275
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004163/ScoringFiles/PGS004163.txt.gz
PGS004326
(PRS154_RA)
 PGP000560 |
Zhang J et al. Environ Health Perspect (2023)
 Rheumatoid arthritis rheumatoid arthritis 154
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004326/ScoringFiles/PGS004326.txt.gz
PGS004817
(RA_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Rheumatoid Arthritis rheumatoid arthritis 786,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004817/ScoringFiles/PGS004817.txt.gz
PGS004818
(RA_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Rheumatoid Arthritis rheumatoid arthritis 6,580,837
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004818/ScoringFiles/PGS004818.txt.gz
PGS004819
(RA_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Rheumatoid Arthritis rheumatoid arthritis 2,624,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004819/ScoringFiles/PGS004819.txt.gz
PGS004820
(RA_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Rheumatoid Arthritis rheumatoid arthritis 6,580,837
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004820/ScoringFiles/PGS004820.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM000577 PGS000194
(G-PROB_Rapos)
 PSS000315|
European Ancestry|
243 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Rheumatoid arhtirits diagnosis in patient with arthritis — AUROC: 0.69 [0.63, 0.76] — RAN_Gprob (Setting III: Selecting patients presenting with inflammatory arthritis at their first visit)
PPM000571 PGS000194
(G-PROB_Rapos)
 PSS000314|
European Ancestry|
245 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Rheumatoid arhtirits diagnosis in patient with arthritis — AUROC: 0.75 [0.68, 0.81] — G-PROB_Raneg (Setting II: Assigning patient diagnoses based on medical records)
PPM000565 PGS000194
(G-PROB_Rapos)
 PSS000322|
Multi-ancestry (including European)|
1,211 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Rheumatoid arhtirits diagnosis in patient with arthritis — AUROC: 0.69 [0.65, 0.72] — G-PROB_Raneg (Setting I: Assigning patient diagnoses based on billing codes)
PPM000578 PGS000195
(G-PROB_Raneg)
 PSS000315|
European Ancestry|
243 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Rheumatoid arhtirits diagnosis in patient with arthritis — AUROC: 0.69 [0.63, 0.76] — G-PROB_Rapos (Setting III: Selecting patients presenting with inflammatory arthritis at their first visit)
PPM000572 PGS000195
(G-PROB_Raneg)
 PSS000314|
European Ancestry|
245 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Rheumatoid arhtirits diagnosis in patient with arthritis — AUROC: 0.75 [0.68, 0.81] — G-PROB_Rapos (Setting II: Assigning patient diagnoses based on medical records)
PPM000566 PGS000195
(G-PROB_Raneg)
 PSS000322|
Multi-ancestry (including European)|
1,211 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Rheumatoid arhtirits diagnosis in patient with arthritis — AUROC: 0.69 [0.65, 0.72] — G-PROB_Rapos (Setting I: Assigning patient diagnoses based on billing codes)
PPM000581 PGS000198
(G-PROB_PsA)
 PSS000313|
European Ancestry|
243 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Psoriatic arthritis diagnosis in patient with arthritis — AUROC: 0.62 [0.48, 0.8] — — (Setting III: Selecting patients presenting with inflammatory arthritis at their first visit)
PPM000575 PGS000198
(G-PROB_PsA)
 PSS000312|
European Ancestry|
245 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Psoriatic arthritis diagnosis in patient with arthritis — AUROC: 0.71 [0.63, 0.82] — — (Setting II: Assigning patient diagnoses based on medical records)
PPM000569 PGS000198
(G-PROB_PsA)
 PSS000321|
Multi-ancestry (including European)|
1,211 individuals
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Reported Trait: Psoriatic arthritis diagnosis in patient with arthritis — AUROC: 0.61 [0.52, 0.69] — — (Setting I: Assigning patient diagnoses based on billing codes)
PPM000971 PGS000342
(wGRS_PsA)
 PSS000490|
Ancestry Not Reported|
543 individuals
 PGP000111 |
Smith MP et al. J Psoriasis Psoriatic Arthritis (2020)
 Reported Trait: Psoriatic arthritis — AUROC: 0.562 [0.506, 0.618] — — —
PPM000972 PGS000343
(wGRS_PsA_HLA)
 PSS000490|
Ancestry Not Reported|
543 individuals
 PGP000111 |
Smith MP et al. J Psoriasis Psoriatic Arthritis (2020)
 Reported Trait: Psoriatic arthritis — AUROC: 0.569 [0.513, 0.625] — — —
PPM008840 PGS001267
(GBE_HC422)
 PSS004486|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.86744 [0.75569, 0.97918] R²: 0.1463
Incremental AUROC (full-covars): -0.00062
PGS R2 (no covariates): 0.00216
PGS AUROC (no covariates): 0.4722 [0.12421, 0.82018]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008841 PGS001267
(GBE_HC422)
 PSS004487|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.98913 [0.972, 1.0] R²: 0.44316
Incremental AUROC (full-covars): 0.0423
PGS R2 (no covariates): 0.24382
PGS AUROC (no covariates): 0.81698 [0.46329, 1.0]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008842 PGS001267
(GBE_HC422)
 PSS004488|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.73638 [0.67151, 0.80124] R²: 0.10414
Incremental AUROC (full-covars): 0.06004
PGS R2 (no covariates): 0.07222
PGS AUROC (no covariates): 0.67545 [0.60736, 0.74353]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008843 PGS001267
(GBE_HC422)
 PSS004489|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.73535 [0.61203, 0.85867] R²: 0.03713
Incremental AUROC (full-covars): -0.01782
PGS R2 (no covariates): 0.00902
PGS AUROC (no covariates): 0.42181 [0.29024, 0.55338]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008844 PGS001267
(GBE_HC422)
 PSS004490|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.74328 [0.70673, 0.77983] R²: 0.10925
Incremental AUROC (full-covars): 0.12994
PGS R2 (no covariates): 0.09877
PGS AUROC (no covariates): 0.72651 [0.68965, 0.76337]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008845 PGS001268
(GBE_HC1242)
 PSS004228|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE ankylosing spondylitis — AUROC: 0.86811 [0.75774, 0.97849] R²: 0.14598
Incremental AUROC (full-covars): 6e-05
PGS R2 (no covariates): 0.00104
PGS AUROC (no covariates): 0.48424 [0.12443, 0.84406]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008846 PGS001268
(GBE_HC1242)
 PSS004229|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE ankylosing spondylitis — AUROC: 0.99148 [0.9789, 1.0] R²: 0.44858
Incremental AUROC (full-covars): 0.04465
PGS R2 (no covariates): 0.23755
PGS AUROC (no covariates): 0.81257 [0.45025, 1.0]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008847 PGS001268
(GBE_HC1242)
 PSS004230|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE ankylosing spondylitis — AUROC: 0.73336 [0.66901, 0.79772] R²: 0.10217
Incremental AUROC (full-covars): 0.0575
PGS R2 (no covariates): 0.06991
PGS AUROC (no covariates): 0.67405 [0.607, 0.74111]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008848 PGS001268
(GBE_HC1242)
 PSS004231|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE ankylosing spondylitis — AUROC: 0.73282 [0.61573, 0.84991] R²: 0.03979
Incremental AUROC (full-covars): -0.01963
PGS R2 (no covariates): 0.00774
PGS AUROC (no covariates): 0.4297 [0.29438, 0.56502]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008849 PGS001268
(GBE_HC1242)
 PSS004232|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE ankylosing spondylitis — AUROC: 0.74878 [0.71314, 0.78442] R²: 0.115
Incremental AUROC (full-covars): 0.12686
PGS R2 (no covariates): 0.10232
PGS AUROC (no covariates): 0.7346 [0.69884, 0.77037]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008933 PGS001287
(GBE_HC91)
 PSS004706|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Psoriatic arthropathy — AUROC: 0.98006 [0.94602, 1.0] Incremental AUROC (full-covars): 0.00516
R²: 0.29301
PGS R2 (no covariates): 0.01017
PGS AUROC (no covariates): 0.72132 [0.63231, 0.81034]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008934 PGS001287
(GBE_HC91)
 PSS004707|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Psoriatic arthropathy — AUROC: 0.99354 [0.98059, 1.0] R²: 0.5357
Incremental AUROC (full-covars): -0.00088
PGS R2 (no covariates): 0.00227
PGS AUROC (no covariates): 0.47826 [0.0, 0.96911]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008935 PGS001287
(GBE_HC91)
 PSS004708|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Psoriatic arthropathy — AUROC: 0.72814 [0.67154, 0.78475] R²: 0.05154
Incremental AUROC (full-covars): 0.08346
PGS R2 (no covariates): 0.0335
PGS AUROC (no covariates): 0.67648 [0.61155, 0.7414]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008936 PGS001287
(GBE_HC91)
 PSS004709|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Psoriatic arthropathy — AUROC: 0.71827 [0.61363, 0.82292] R²: 0.04395
Incremental AUROC (full-covars): 0.00838
PGS R2 (no covariates): 0.00229
PGS AUROC (no covariates): 0.56943 [0.44876, 0.69011]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008937 PGS001287
(GBE_HC91)
 PSS004710|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Psoriatic arthropathy — AUROC: 0.6376 [0.60073, 0.67447] R²: 0.02161
Incremental AUROC (full-covars): 0.0945
PGS R2 (no covariates): 0.02111
PGS AUROC (no covariates): 0.63567 [0.598, 0.67334]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009039 PGS001309
(GBE_HC1212)
 PSS004193|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other rheumatoid arthritis — AUROC: 0.69751 [0.65515, 0.73988] R²: 0.05129
Incremental AUROC (full-covars): -0.00017
PGS R2 (no covariates): 0.00056
PGS AUROC (no covariates): 0.52591 [0.47486, 0.57696]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009040 PGS001309
(GBE_HC1212)
 PSS004194|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other rheumatoid arthritis — AUROC: 0.67331 [0.56418, 0.78244] R²: 0.07058
Incremental AUROC (full-covars): -0.02511
PGS R2 (no covariates): 0.0
PGS AUROC (no covariates): 0.50714 [0.3797, 0.63457]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009041 PGS001309
(GBE_HC1212)
 PSS004195|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other rheumatoid arthritis — AUROC: 0.6872 [0.66167, 0.71273] R²: 0.04826
Incremental AUROC (full-covars): 0.02601
PGS R2 (no covariates): 0.01537
PGS AUROC (no covariates): 0.59782 [0.56885, 0.62679]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009042 PGS001309
(GBE_HC1212)
 PSS004196|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other rheumatoid arthritis — AUROC: 0.70239 [0.66722, 0.73755] R²: 0.06164
Incremental AUROC (full-covars): -0.00362
PGS R2 (no covariates): 0.00158
PGS AUROC (no covariates): 0.53481 [0.4923, 0.57731]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009043 PGS001309
(GBE_HC1212)
 PSS004197|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other rheumatoid arthritis — AUROC: 0.66538 [0.65101, 0.67976] R²: 0.03893
Incremental AUROC (full-covars): 0.03207
PGS R2 (no covariates): 0.01495
PGS AUROC (no covariates): 0.59784 [0.582, 0.61368]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009044 PGS001310
(GBE_HC430)
 PSS004491|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.70522 [0.66309, 0.74736] R²: 0.0544
Incremental AUROC (full-covars): 0.00203
PGS R2 (no covariates): 0.00109
PGS AUROC (no covariates): 0.53147 [0.47999, 0.58294]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009045 PGS001310
(GBE_HC430)
 PSS004492|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.66116 [0.54578, 0.77655] R²: 0.06929
Incremental AUROC (full-covars): -0.02514
PGS R2 (no covariates): 0.00033
PGS AUROC (no covariates): 0.52178 [0.38366, 0.6599]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009046 PGS001310
(GBE_HC430)
 PSS004493|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.68857 [0.6632, 0.71393] R²: 0.04919
Incremental AUROC (full-covars): 0.02092
PGS R2 (no covariates): 0.01316
PGS AUROC (no covariates): 0.58714 [0.55751, 0.61676]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009047 PGS001310
(GBE_HC430)
 PSS004494|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.70402 [0.66905, 0.73899] R²: 0.06207
Incremental AUROC (full-covars): -0.0019
PGS R2 (no covariates): 0.00142
PGS AUROC (no covariates): 0.53137 [0.48984, 0.57291]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009048 PGS001310
(GBE_HC430)
 PSS004495|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.66508 [0.65049, 0.67967] R²: 0.03894
Incremental AUROC (full-covars): 0.03077
PGS R2 (no covariates): 0.01509
PGS AUROC (no covariates): 0.60018 [0.58428, 0.61607]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009049 PGS001311
(GBE_HC1211)
 PSS004188|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE seropositive rheumatoid arthritis — AUROC: 0.90345 [0.82233, 0.98457] R²: 0.16794
Incremental AUROC (full-covars): -0.00669
PGS R2 (no covariates): 0.01613
PGS AUROC (no covariates): 0.39273 [0.11505, 0.67041]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009050 PGS001311
(GBE_HC1211)
 PSS004190|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE seropositive rheumatoid arthritis — AUROC: 0.76787 [0.6839, 0.85184] R²: 0.08412
Incremental AUROC (full-covars): 0.0418
PGS R2 (no covariates): 0.05847
PGS AUROC (no covariates): 0.73164 [0.63667, 0.82662]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009051 PGS001311
(GBE_HC1211)
 PSS004191|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE seropositive rheumatoid arthritis — AUROC: 0.76865 [0.6608, 0.87651] R²: 0.08089
Incremental AUROC (full-covars): -0.00731
PGS R2 (no covariates): 0.00567
PGS AUROC (no covariates): 0.50626 [0.35145, 0.66107]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009052 PGS001311
(GBE_HC1211)
 PSS004192|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE seropositive rheumatoid arthritis — AUROC: 0.73785 [0.69634, 0.77936] R²: 0.05309
Incremental AUROC (full-covars): 0.09202
PGS R2 (no covariates): 0.04612
PGS AUROC (no covariates): 0.7072 [0.65945, 0.75495]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009888 PGS001875
(portability-PLR_714.1)
 PSS009352|
European Ancestry|
18,393 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0416 [0.0272, 0.056] sex, age, birth date, deprivation index, 16 PCs —
PPM009889 PGS001875
(portability-PLR_714.1)
 PSS009126|
European Ancestry|
3,878 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0554 [0.0239, 0.0868] sex, age, birth date, deprivation index, 16 PCs —
PPM009890 PGS001875
(portability-PLR_714.1)
 PSS008680|
European Ancestry|
6,241 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0322 [0.0073, 0.057] sex, age, birth date, deprivation index, 16 PCs —
PPM009891 PGS001875
(portability-PLR_714.1)
 PSS008454|
Greater Middle Eastern Ancestry|
1,128 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0363 [-0.0226, 0.095] sex, age, birth date, deprivation index, 16 PCs —
PPM009892 PGS001875
(portability-PLR_714.1)
 PSS008234|
South Asian Ancestry|
5,728 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0097 [-0.0163, 0.0356] sex, age, birth date, deprivation index, 16 PCs —
PPM009893 PGS001875
(portability-PLR_714.1)
 PSS008014|
East Asian Ancestry|
1,754 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0277 [-0.0194, 0.0746] sex, age, birth date, deprivation index, 16 PCs —
PPM009894 PGS001875
(portability-PLR_714.1)
 PSS007799|
African Ancestry|
2,277 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): -0.0138 [-0.055, 0.0275] sex, age, birth date, deprivation index, 16 PCs —
PPM009895 PGS001875
(portability-PLR_714.1)
 PSS008903|
African Ancestry|
3,634 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): -0.0251 [-0.0577, 0.0075] sex, age, birth date, deprivation index, 16 PCs —
PPM009896 PGS001876
(portability-PLR_715.2)
 PSS009353|
European Ancestry|
18,262 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0797 [0.0653, 0.0941] sex, age, birth date, deprivation index, 16 PCs —
PPM009897 PGS001876
(portability-PLR_715.2)
 PSS009127|
European Ancestry|
3,854 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0453 [0.0137, 0.0769] sex, age, birth date, deprivation index, 16 PCs —
PPM009898 PGS001876
(portability-PLR_715.2)
 PSS008681|
European Ancestry|
6,216 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0521 [0.0272, 0.0769] sex, age, birth date, deprivation index, 16 PCs —
PPM009899 PGS001876
(portability-PLR_715.2)
 PSS008455|
Greater Middle Eastern Ancestry|
1,124 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.1472 [0.0889, 0.2044] sex, age, birth date, deprivation index, 16 PCs —
PPM009900 PGS001876
(portability-PLR_715.2)
 PSS008235|
South Asian Ancestry|
5,671 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0279 [0.0019, 0.054] sex, age, birth date, deprivation index, 16 PCs —
PPM011564 PGS002088
(portability-ldpred2_714.1)
 PSS009352|
European Ancestry|
18,393 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0434 [0.029, 0.0578] sex, age, birth date, deprivation index, 16 PCs —
PPM011565 PGS002088
(portability-ldpred2_714.1)
 PSS009126|
European Ancestry|
3,878 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0532 [0.0217, 0.0846] sex, age, birth date, deprivation index, 16 PCs —
PPM011566 PGS002088
(portability-ldpred2_714.1)
 PSS008680|
European Ancestry|
6,241 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0284 [0.0036, 0.0532] sex, age, birth date, deprivation index, 16 PCs —
PPM011568 PGS002088
(portability-ldpred2_714.1)
 PSS008234|
South Asian Ancestry|
5,728 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0135 [-0.0125, 0.0394] sex, age, birth date, deprivation index, 16 PCs —
PPM011569 PGS002088
(portability-ldpred2_714.1)
 PSS008014|
East Asian Ancestry|
1,754 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0226 [-0.0245, 0.0696] sex, age, birth date, deprivation index, 16 PCs —
PPM011570 PGS002088
(portability-ldpred2_714.1)
 PSS007799|
African Ancestry|
2,277 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): -0.0007 [-0.0419, 0.0406] sex, age, birth date, deprivation index, 16 PCs —
PPM011571 PGS002088
(portability-ldpred2_714.1)
 PSS008903|
African Ancestry|
3,634 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): -0.0214 [-0.054, 0.0112] sex, age, birth date, deprivation index, 16 PCs —
PPM011567 PGS002088
(portability-ldpred2_714.1)
 PSS008454|
Greater Middle Eastern Ancestry|
1,128 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Rheumatoid arthritis — — Partial Correlation (partial-r): 0.0403 [-0.0186, 0.099] sex, age, birth date, deprivation index, 16 PCs —
PPM011572 PGS002089
(portability-ldpred2_715.2)
 PSS009353|
European Ancestry|
18,262 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0919 [0.0775, 0.1063] sex, age, birth date, deprivation index, 16 PCs —
PPM011573 PGS002089
(portability-ldpred2_715.2)
 PSS009127|
European Ancestry|
3,854 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0476 [0.016, 0.0791] sex, age, birth date, deprivation index, 16 PCs —
PPM011574 PGS002089
(portability-ldpred2_715.2)
 PSS008681|
European Ancestry|
6,216 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0596 [0.0348, 0.0844] sex, age, birth date, deprivation index, 16 PCs —
PPM011576 PGS002089
(portability-ldpred2_715.2)
 PSS008235|
South Asian Ancestry|
5,671 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.0424 [0.0163, 0.0684] sex, age, birth date, deprivation index, 16 PCs —
PPM011575 PGS002089
(portability-ldpred2_715.2)
 PSS008455|
Greater Middle Eastern Ancestry|
1,124 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ankylosing spondylitis — — Partial Correlation (partial-r): 0.1631 [0.1051, 0.22] sex, age, birth date, deprivation index, 16 PCs —
PPM012870 PGS002260
(PRS_RA)
 PSS009586|
East Asian Ancestry|
740 individuals
 PGP000286 |
Honda S et al. Arthritis Rheumatol (2022)
 Reported Trait: Severe radiographic progression in patients with rheumatoid arthritis — — OR (top vs 2nd quintile): 1.87 [1.11, 3.15] — —
PPM012871 PGS002260
(PRS_RA)
 PSS009586|
East Asian Ancestry|
740 individuals
 PGP000286 |
Honda S et al. Arthritis Rheumatol (2022)
 Reported Trait: Severe radiographic progression in patients with rheumatoid arthritis (age of onset <40 years) — — OR (top vs 2nd quintile): 6.29 [1.85, 21.4] — —
PPM012872 PGS002260
(PRS_RA)
 PSS009586|
East Asian Ancestry|
740 individuals
 PGP000286 |
Honda S et al. Arthritis Rheumatol (2022)
 Reported Trait: Severe radiographic progression in patients with rheumatoid arthritis OR: 1.3 [1.13, 1.5] — — Age of onset, sex, ever-smoker, ACPAs positivity, rheumatoid factor positivity, BMI, periodontitis, use of methotrexate, use of bDMARD, HLA-DRB1 (Ser11) —
PPM014915 PGS002745
(metaPGS_RA)
 PSS009927|
Multi-ancestry (including European)|
7,460 individuals
 PGP000357 |
Ishigaki K et al. Nat Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.65 Liability R2: 0.054 Sex, Genotype PCs Performance metrics are the mean values across eave-one-cohort-out cross-validation folds
PPM014916 PGS002745
(metaPGS_RA)
 PSS009930|
European Ancestry|
3,887 individuals
 PGP000357 |
Ishigaki K et al. Nat Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.66 Liability R2: 0.059 Sex, Genotype PCs Performance metrics are the mean values across eave-one-cohort-out cross-validation folds
PPM014917 PGS002745
(metaPGS_RA)
 PSS009929|
East Asian Ancestry|
21,704 individuals
 PGP000357 |
Ishigaki K et al. Nat Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.66 Liability R2: 0.057 Sex, Genotype PCs Performance metrics are the mean values across eave-one-cohort-out cross-validation folds
PPM014918 PGS002745
(metaPGS_RA)
 PSS009928|
Multi-ancestry (excluding European)|
1,304 individuals
 PGP000357 |
Ishigaki K et al. Nat Genet (2022)
 Reported Trait: Rheumatoid arthritis — AUROC: 0.59 Liability R2: 0.018 Sex, Genotype PCs Performance metrics are the mean values across eave-one-cohort-out cross-validation folds
PPM014969 PGS002769
(Rheumatoid_arthritis_prscs)
 PSS009939|
European Ancestry|
39,444 individuals
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Reported Trait: Seropositive rheumatoid arthritis OR: 1.72 [1.61, 1.83] — — age, sex, 10 PCs, technical covariates —
PPM017073 PGS003420
(PRS100_PRScs)
 PSS010115|
East Asian Ancestry|
1,298 individuals
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.7886 — — —
PPM017074 PGS003421
(PRS16_C+T)
 PSS010115|
East Asian Ancestry|
1,298 individuals
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.7876 — — —
PPM017075 PGS003422
(PRS16_PRSice2)
 PSS010115|
East Asian Ancestry|
1,298 individuals
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.7876 — — —
PPM017076 PGS003423
(PRS100_Lassosum)
 PSS010115|
East Asian Ancestry|
1,298 individuals
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.7754 — — —
PPM017077 PGS003424
(PRS100_LDpred2)
 PSS010115|
East Asian Ancestry|
1,298 individuals
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Reported Trait: Ankylosing spondylitis — AUROC: 0.7605 — — —
PPM020015 PGS003994
(dbslmm.auto.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.33393
β: 0.28813		 AUROC: 0.58 — 0 beta = log(or)/sd_pgs
PPM020017 PGS003994
(dbslmm.auto.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.37351
β: 0.31737		 AUROC: 0.57 — 0 beta = log(or)/sd_pgs
PPM020018 PGS003994
(dbslmm.auto.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.1176
β: 0.11118		 AUROC: 0.53 — 0 beta = log(or)/sd_pgs
PPM020019 PGS003994
(dbslmm.auto.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.82399
β: 0.60103		 AUROC: 0.66 — 0 beta = log(or)/sd_pgs
PPM020016 PGS003994
(dbslmm.auto.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.50841
β: 0.41106		 AUROC: 0.61 — 0 beta = log(or)/sd_pgs
PPM020050 PGS004010
(lassosum.auto.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.32987
β: 0.28508		 AUROC: 0.59 — 0 beta = log(or)/sd_pgs
PPM020051 PGS004010
(lassosum.auto.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.49732
β: 0.40368		 AUROC: 0.61 — 0 beta = log(or)/sd_pgs
PPM020052 PGS004010
(lassosum.auto.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.28607
β: 0.25159		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020053 PGS004010
(lassosum.auto.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.18691
β: 0.17135		 AUROC: 0.56 — 0 beta = log(or)/sd_pgs
PPM020054 PGS004010
(lassosum.auto.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.59047
β: 0.46403		 AUROC: 0.67 — 0 beta = log(or)/sd_pgs
PPM020055 PGS004021
(lassosum.CV.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.46364
β: 0.38093		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020056 PGS004021
(lassosum.CV.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.61006
β: 0.47627		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020057 PGS004021
(lassosum.CV.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.91213
β: 0.64822		 AUROC: 0.69 — 0 beta = log(or)/sd_pgs
PPM020058 PGS004021
(lassosum.CV.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.4387
β: 0.36374		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020059 PGS004021
(lassosum.CV.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.11267
β: 0.74795		 AUROC: 0.71 — 0 beta = log(or)/sd_pgs
PPM020001 PGS004049
(ldpred2.CV.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.63972
β: 0.49453		 AUROC: 0.64 — 0 beta = log(or)/sd_pgs
PPM020002 PGS004049
(ldpred2.CV.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.9896
β: 0.68793		 AUROC: 0.71 — 0 beta = log(or)/sd_pgs
PPM020003 PGS004049
(ldpred2.CV.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.54092
β: 0.43238		 AUROC: 0.62 — 0 beta = log(or)/sd_pgs
PPM020004 PGS004049
(ldpred2.CV.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.36914
β: 0.86253		 AUROC: 0.73 — 0 beta = log(or)/sd_pgs
PPM020000 PGS004049
(ldpred2.CV.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.55377
β: 0.44069		 AUROC: 0.62 — 0 beta = log(or)/sd_pgs
PPM020035 PGS004064
(megaprs.auto.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.52285
β: 0.42059		 AUROC: 0.61 — 0 beta = log(or)/sd_pgs
PPM020036 PGS004064
(megaprs.auto.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.6765
β: 0.51671		 AUROC: 0.64 — 0 beta = log(or)/sd_pgs
PPM020037 PGS004064
(megaprs.auto.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.16519
β: 0.77251		 AUROC: 0.69 — 0 beta = log(or)/sd_pgs
PPM020038 PGS004064
(megaprs.auto.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.52777
β: 0.42381		 AUROC: 0.62 — 0 beta = log(or)/sd_pgs
PPM020039 PGS004064
(megaprs.auto.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.12896
β: 0.75563		 AUROC: 0.71 — 0 beta = log(or)/sd_pgs
PPM020030 PGS004079
(megaprs.CV.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.50199
β: 0.40679		 AUROC: 0.61 — 0 beta = log(or)/sd_pgs
PPM020031 PGS004079
(megaprs.CV.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.61696
β: 0.48055		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020032 PGS004079
(megaprs.CV.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.0218
β: 0.70399		 AUROC: 0.71 — 0 beta = log(or)/sd_pgs
PPM020033 PGS004079
(megaprs.CV.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.60515
β: 0.47322		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020034 PGS004079
(megaprs.CV.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.22137
β: 0.79813		 AUROC: 0.72 — 0 beta = log(or)/sd_pgs
PPM020045 PGS004094
(prscs.auto.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.43309
β: 0.35983		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020046 PGS004094
(prscs.auto.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.64768
β: 0.49937		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020047 PGS004094
(prscs.auto.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.45841
β: 0.37734		 AUROC: 0.61 — 0 beta = log(or)/sd_pgs
PPM020048 PGS004094
(prscs.auto.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.30074
β: 0.26293		 AUROC: 0.59 — 0 beta = log(or)/sd_pgs
PPM020049 PGS004094
(prscs.auto.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.88898
β: 0.63604		 AUROC: 0.69 — 0 beta = log(or)/sd_pgs
PPM020040 PGS004103
(prscs.CV.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.39977
β: 0.33631		 AUROC: 0.59 — 0 beta = log(or)/sd_pgs
PPM020041 PGS004103
(prscs.CV.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.43354
β: 0.36015		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020042 PGS004103
(prscs.CV.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.62378
β: 0.48476		 AUROC: 0.65 — 0 beta = log(or)/sd_pgs
PPM020043 PGS004103
(prscs.CV.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.24983
β: 0.22301		 AUROC: 0.56 — 0 beta = log(or)/sd_pgs
PPM020044 PGS004103
(prscs.CV.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.9189
β: 0.65175		 AUROC: 0.68 — 0 beta = log(or)/sd_pgs
PPM020005 PGS004118
(pt_clump.auto.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.33056
β: 0.2856		 AUROC: 0.58 — 0 beta = log(or)/sd_pgs
PPM020006 PGS004118
(pt_clump.auto.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.40296
β: 0.33858		 AUROC: 0.59 — 0 beta = log(or)/sd_pgs
PPM020007 PGS004118
(pt_clump.auto.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.70576
β: 0.53401		 AUROC: 0.65 — 0 beta = log(or)/sd_pgs
PPM020008 PGS004118
(pt_clump.auto.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.30274
β: 0.26447		 AUROC: 0.57 — 0 beta = log(or)/sd_pgs
PPM020009 PGS004118
(pt_clump.auto.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.56663
β: 0.44893		 AUROC: 0.62 — 0 beta = log(or)/sd_pgs
PPM020010 PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.34749
β: 0.29824		 AUROC: 0.58 — 0 beta = log(or)/sd_pgs
PPM020011 PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.43562
β: 0.3616		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020012 PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.54617
β: 0.43578		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020013 PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.33067
β: 0.28568		 AUROC: 0.58 — 0 beta = log(or)/sd_pgs
PPM020014 PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.49068
β: 0.39923		 AUROC: 0.61 — 0 beta = log(or)/sd_pgs
PPM020020 PGS004148
(sbayesr.auto.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.39911
β: 0.33583		 AUROC: 0.59 — 0 beta = log(or)/sd_pgs
PPM020021 PGS004148
(sbayesr.auto.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.62873
β: 0.4878		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020022 PGS004148
(sbayesr.auto.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.86907
β: 0.62544		 AUROC: 0.67 — 0 beta = log(or)/sd_pgs
PPM020023 PGS004148
(sbayesr.auto.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.46527
β: 0.38204		 AUROC: 0.6 — 0 beta = log(or)/sd_pgs
PPM020024 PGS004148
(sbayesr.auto.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.74045
β: 0.55414		 AUROC: 0.66 — 0 beta = log(or)/sd_pgs
PPM020025 PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PSS011222|
European Ancestry|
199,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.64114
β: 0.49539		 AUROC: 0.63 — 0 beta = log(or)/sd_pgs
PPM020026 PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PSS011233|
European Ancestry|
388,890 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.75402
β: 0.56191		 AUROC: 0.65 — 0 beta = log(or)/sd_pgs
PPM020027 PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PSS011246|
South Asian Ancestry|
44,057 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.39078
β: 0.87162		 AUROC: 0.74 — 0 beta = log(or)/sd_pgs
PPM020028 PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PSS011262|
European Ancestry|
66,865 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 1.6676
β: 0.51138		 AUROC: 0.64 — 0 beta = log(or)/sd_pgs
PPM020029 PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PSS011275|
European Ancestry|
90,274 individuals
 PGP000517 |
Monti M R et al. medRxiv (2023)
|Pre		 Reported Trait: Seropositive RA OR: 2.46183
β: 0.90091		 AUROC: 0.75 — 0 beta = log(or)/sd_pgs
PPM020440 PGS004326
(PRS154_RA)
 PSS011363|
European Ancestry|
342,973 individuals
 PGP000560 |
Zhang J et al. Environ Health Perspect (2023)
 Reported Trait: Incident rheumatoid arthritis HR: 1.22 [1.17, 1.27] — — age, sex, UK Biobank assessment center, household income, education level, smoking status, body mass index, alcohol consumption, sedentary time, physical activity duration, healthy diet score, first 10 genetic principal components, and genotyping batch. —
PPM020441 PGS004326
(PRS154_RA)
 PSS011363|
European Ancestry|
342,973 individuals
 PGP000560 |
Zhang J et al. Environ Health Perspect (2023)
 Reported Trait: Incident rheumatoid arthritis with air pollution — — Hazard ratio (HR, high air pollution and PRS in top tertile vs low air pollution and PRS in bottom tertile): 1.73 [1.39, 2.17] age, sex, UK Biobank assessment center, household income, education level, smoking status, body mass index, alcohol consumption, sedentary time, physical activity duration, healthy diet score, first 10 genetic principal components, and genotyping batch. —
PPM021042 PGS004817
(RA_PRSmix_eur)
 PSS011465|
European Ancestry|
9,462 individuals
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Reported Trait: Rheumatoid Arthritis — — Incremental R2 (Full model versus model with only covariates): 0.008 [0.004, 0.012] age, sex, PC1, PC2, PC3, PC4, PC5, PC6, PC7, PC8, PC9, PC10 Incremental R2 (Full model versus model with only covariates)
PPM021043 PGS004818
(RA_PRSmix_sas)
 PSS011474|
South Asian Ancestry|
8,837 individuals
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Reported Trait: Rheumatoid Arthritis — — Incremental R2 (Full model versus model with only covariates): 0.008 [0.005, 0.012] age, sex, PC1, PC2, PC3, PC4, PC5, PC6, PC7, PC8, PC9, PC10 Incremental R2 (Full model versus model with only covariates)
PPM021044 PGS004819
(RA_PRSmixPlus_eur)
 PSS011465|
European Ancestry|
9,462 individuals
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Reported Trait: Rheumatoid Arthritis — — Incremental R2 (Full model versus model with only covariates): 0.011 [0.007, 0.015] age, sex, PC1, PC2, PC3, PC4, PC5, PC6, PC7, PC8, PC9, PC10 Incremental R2 (Full model versus model with only covariates)
PPM021045 PGS004820
(RA_PRSmixPlus_sas)
 PSS011474|
South Asian Ancestry|
8,837 individuals
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Reported Trait: Rheumatoid Arthritis — — Incremental R2 (Full model versus model with only covariates): 0.009 [0.005, 0.013] age, sex, PC1, PC2, PC3, PC4, PC5, PC6, PC7, PC8, PC9, PC10 Incremental R2 (Full model versus model with only covariates)

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008903 — — 3,634 individuals — African unspecified Nigeria (West Africa) UKB —
PSS011275 — —
[
  • 205 cases
  • , 90,069 controls
]
 — European — UKB —
PSS008014 — — 1,754 individuals — East Asian China (East Asia) UKB —
PSS011465 — — 9,462 individuals — European — AllofUs —
PSS010115 — —
[
  • 185 cases
  • , 1,112 controls
]
 — East Asian
(Taiwanese)		 — NR TPMI
PSS009586 Severe progressive group as patients with the top quartile of SHS (more than 35 points) and the non-severe progressive group as the remaining patients. — 740 individuals,
14.4 % Male samples
 Mean = 48.5 years
Sd = 12.4 years		 East Asian
(Japanese)		 — IORRA —
PSS004188 — —
[
  • 5 cases
  • , 6,492 controls
]
 — African unspecified — UKB —
PSS011474 — — 8,837 individuals — South Asian — G&H —
PSS004190 — —
[
  • 32 cases
  • , 24,873 controls
]
 — European non-white British ancestry UKB —
PSS004191 — —
[
  • 18 cases
  • , 7,813 controls
]
 — South Asian — UKB —
PSS004192 — —
[
  • 127 cases
  • , 67,298 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS004193 — —
[
  • 122 cases
  • , 6,375 controls
]
 — African unspecified — UKB —
PSS004706 — —
[
  • 2 cases
  • , 6,495 controls
]
 — African unspecified — UKB —
PSS004707 — —
[
  • 2 cases
  • , 1,702 controls
]
 — East Asian — UKB —
PSS004708 — —
[
  • 81 cases
  • , 24,824 controls
]
 — European non-white British ancestry UKB —
PSS000312 Setting II: Based on ICD codes and review of medical records from Partners HealthCare Biobank; controls = other non-matching arthritis diseases Median = 8.0 years
[
  • 30 cases
  • , 215 controls
]
,
32.0 % Male samples
 — European — PHB —
PSS000313 Setting III: Based on ICD codes and final diagnosis in medical records from Partners HealthCare Biobank; controls = other non-matching arthritis diseases Median = 7.0 years
[
  • 22 cases
  • , 221 controls
]
,
32.0 % Male samples
 — European — PHB —
PSS000314 Setting II: Based on ICD codes and review of medical records from Partners HealthCare Biobank; controls = other non-matching arthritis diseases Median = 8.0 years
[
  • 90 cases
  • , 155 controls
]
,
32.0 % Male samples
 — European — PHB —
PSS000315 Setting III: Based on ICD codes and final diagnosis in medical records from Partners HealthCare Biobank; controls = other non-matching arthritis diseases Median = 7.0 years
[
  • 115 cases
  • , 128 controls
]
,
32.0 % Male samples
 — European — PHB —
PSS004709 — —
[
  • 21 cases
  • , 7,810 controls
]
 — South Asian — UKB —
PSS004710 — —
[
  • 231 cases
  • , 67,194 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS004194 — —
[
  • 19 cases
  • , 1,685 controls
]
 — East Asian — UKB —
PSS004195 — —
[
  • 409 cases
  • , 24,496 controls
]
 — European non-white British ancestry UKB —
PSS004196 — —
[
  • 197 cases
  • , 7,634 controls
]
 — South Asian — UKB —
PSS000321 Setting I: Based on ICD codes and expert opinion (ACR2010 criteria), in eMERGE network EMR database from Stanaway 2018; controls = other non-matching arthritis diseases Median = 16.0 years
[
  • 52 cases
  • , 1,159 controls
]
,
43.0 % Male samples
 — European, African unspecified, Asian unspecified, NR Primarily European, African and Asian ancestry eMERGE —
PSS000322 Setting I: Based on ICD codes and expert opinion (ACR2010 criteria), in eMERGE network EMR database from Stanaway 2018; controls = other non-matching arthritis diseases Median = 16.0 years
[
  • 574 cases
  • , 637 controls
]
,
43.0 % Male samples
 — European, African unspecified, Asian unspecified, NR Primarily European, African and Asian ancestry eMERGE —
PSS007799 — — 2,277 individuals — African American or Afro-Caribbean Carribean UKB —
PSS009927 — —
[
  • 969 cases
  • , 6,491 controls
]
 — European, East Asian, African unspecified, South Asian, Greater Middle Eastern (Middle Eastern, North African or Persian) — BBJ Average Cohort Size. Overlaps GWAS Cohorts; however performance metrics are derived using a leave-one-cohort-out cross-validation to minimize overlap
PSS009928 — —
[
  • 624 cases
  • , 680 controls
]
 — African unspecified, South Asian, Greater Middle Eastern (Middle Eastern, North African or Persian) — NR Average Cohort Size. Overlaps GWAS Cohorts; however performance metrics are derived using a leave-one-cohort-out cross-validation to minimize overlap
PSS009929 — —
[
  • 1,378 cases
  • , 20,326 controls
]
 — East Asian — BBJ Average Cohort Size. Overlaps GWAS Cohorts; however performance metrics are derived using a leave-one-cohort-out cross-validation to minimize overlap
PSS009930 — —
[
  • 894 cases
  • , 2,993 controls
]
 — European — NR Average Cohort Size. Overlaps GWAS Cohorts; however performance metrics are derived using a leave-one-cohort-out cross-validation to minimize overlap
PSS008454 — — 1,128 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS008455 — — 1,124 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009352 — — 18,393 individuals — European UK (+ Ireland) UKB —
PSS009353 — — 18,262 individuals — European UK (+ Ireland) UKB —
PSS004228 — —
[
  • 5 cases
  • , 6,492 controls
]
 — African unspecified — UKB —
PSS004229 — —
[
  • 2 cases
  • , 1,702 controls
]
 — East Asian — UKB —
PSS004486 — —
[
  • 5 cases
  • , 6,492 controls
]
 — African unspecified — UKB —
PSS004487 — —
[
  • 2 cases
  • , 1,702 controls
]
 — East Asian — UKB —
PSS004488 — —
[
  • 79 cases
  • , 24,826 controls
]
 — European non-white British ancestry UKB —
PSS004489 — —
[
  • 14 cases
  • , 7,817 controls
]
 — South Asian — UKB —
PSS004490 — —
[
  • 268 cases
  • , 67,157 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS004230 — —
[
  • 80 cases
  • , 24,825 controls
]
 — European non-white British ancestry UKB —
PSS004231 — —
[
  • 15 cases
  • , 7,816 controls
]
 — South Asian — UKB —
PSS000490 Cases included physician-confirmed psoriatic arthritis (PsA). Controls inclded individuals with psoriasis with no history of joint symptoms (psoriasis only - PsO). —
[
  • 140 cases
  • , 403 controls
]
 — NR — NR —
PSS004232 — —
[
  • 278 cases
  • , 67,147 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS004491 — —
[
  • 118 cases
  • , 6,379 controls
]
 — African unspecified — UKB —
PSS004492 — —
[
  • 18 cases
  • , 1,686 controls
]
 — East Asian — UKB —
PSS004493 — —
[
  • 399 cases
  • , 24,506 controls
]
 — European non-white British ancestry UKB —
PSS004494 — —
[
  • 194 cases
  • , 7,637 controls
]
 — South Asian — UKB —
PSS004495 — —
[
  • 1,301 cases
  • , 66,124 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS011222 — —
[
  • 2,384 cases
  • , 196,890 controls
]
 — European — EB —
PSS011363 ICD10: M05, M06 Median = 8.1 years
[
  • 2,034 cases
  • , 340,939 controls
]
,
46.58 % Male samples
 Mean = 57.0 years
Sd = 7.9 years		 European — UKB —
PSS011233 RHEUMA_SEROPOS_OTH, ICD10: M05[8-9], ICD9: 7140A —
[
  • 9,332 cases
  • , 379,558 controls
]
 — European — FinnGen —
PSS009939 — — 39,444 individuals — European
(Finnish)		 — FinnGen —
PSS009126 — — 3,878 individuals — European Poland (NE Europe) UKB —
PSS009127 — — 3,854 individuals — European Poland (NE Europe) UKB —
PSS008680 — — 6,241 individuals — European Italy (South Europe) UKB —
PSS008234 — — 5,728 individuals — South Asian India (South Asia) UKB —
PSS008235 — — 5,671 individuals — South Asian India (South Asia) UKB —
PSS011246 — —
[
  • 60 cases
  • , 43,997 controls
]
 — South Asian — G&H —
PSS008681 — — 6,216 individuals — European Italy (South Europe) UKB —
PSS004197 — —
[
  • 1,343 cases
  • , 66,082 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS011262 — —
[
  • 1,139 cases
  • , 65,726 controls
]
 — European — HUNT —