Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004040
(ldpred2.CV.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,041,298
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004040/ScoringFiles/PGS004040.txt.gz
PGS004082
(prscs.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,043,329
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004082/ScoringFiles/PGS004082.txt.gz
PGS004688
(breast_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Breast cancer breast carcinoma 1,044,110
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004688/ScoringFiles/PGS004688.txt.gz
PGS002855
(ExPRSweb_BMI_23104-raw_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Body mass index (BMI) body mass index 1,044,654
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002855/ScoringFiles/PGS002855.txt.gz
PGS004027
(ldpred2.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,045,276
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004027/ScoringFiles/PGS004027.txt.gz
PGS004042
(ldpred2.CV.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,045,276
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004042/ScoringFiles/PGS004042.txt.gz
PGS004034
(ldpred2.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 1,046,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004034/ScoringFiles/PGS004034.txt.gz
PGS000637
(PRSWEB_PHECODE201_20001-1052_PRS-CS_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Hodgkin's disease Hodgkins lymphoma 1,047,511
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000637/ScoringFiles/PGS000637.txt.gz
PGS000643
(PRSWEB_PHECODE202.21_C-FOLLICULAR-LYMPHOMA_PRS-CS_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Nodular lymphoma follicular lymphoma 1,048,780
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000643/ScoringFiles/PGS000643.txt.gz
PGS004030
(ldpred2.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,050,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004030/ScoringFiles/PGS004030.txt.gz
PGS004031
(ldpred2.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,050,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004031/ScoringFiles/PGS004031.txt.gz
PGS004045
(ldpred2.CV.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,050,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004045/ScoringFiles/PGS004045.txt.gz
PGS004046
(ldpred2.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,050,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004046/ScoringFiles/PGS004046.txt.gz
PGS004717
(ALT_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alanine aminotransferase serum alanine aminotransferase amount 1,051,633
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004717/ScoringFiles/PGS004717.txt.gz
PGS004841
(tc_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total cholesterol total cholesterol measurement 1,051,726
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004841/ScoringFiles/PGS004841.txt.gz
PGS002763
(Hip_osteoarthritis_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Hip osteoarthritis osteoarthritis, hip 1,052,273
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002763/ScoringFiles/PGS002763.txt.gz
PGS002767
(Knee_osteoarthritis_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Knee osteoarthritis osteoarthritis, knee 1,052,275
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002767/ScoringFiles/PGS002767.txt.gz
PGS002845
(ExPRSweb_BMI_21001-raw_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Body mass index (BMI) body mass index 1,052,511
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002845/ScoringFiles/PGS002845.txt.gz
PGS002772
(Venous_thromboembolism_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Venous thromboembolism venous thromboembolism 1,052,790
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002772/ScoringFiles/PGS002772.txt.gz
PGS002850
(ExPRSweb_BMI_23104-irnt_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Body mass index (BMI) body mass index 1,053,861
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002850/ScoringFiles/PGS002850.txt.gz
PGS003874
(LDL_PRScsx_ARB_SASweights)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,054,648
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003874/ScoringFiles/PGS003874.txt.gz
PGS003880
(HDL_PRScsx_ARB_SASweights)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,054,648
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003880/ScoringFiles/PGS003880.txt.gz
PGS003372
(GSCAN_SmkCes_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking cessation smoking cessation 1,055,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003372/ScoringFiles/PGS003372.txt.gz
PGS003368
(GSCAN_CigDay_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Cigarettes smoked per day cigarettes per day measurement 1,055,811
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003368/ScoringFiles/PGS003368.txt.gz
PGS003360
(GSCAN_SmkInit_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking initiation smoking initiation 1,055,915
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003360/ScoringFiles/PGS003360.txt.gz
PGS003364
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Age of smoking initiation age at initiation of smoking 1,055,960
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003364/ScoringFiles/PGS003364.txt.gz
PGS003376
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 1,055,988
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003376/ScoringFiles/PGS003376.txt.gz
PGS000749
(PRS_COMBINED)
 PGP000152 |
Gola D et al. Circ Genom Precis Med (2020)
 Coronary artery disease coronary artery disease 1,056,021
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000749/ScoringFiles/PGS000749.txt.gz
PGS003882
(SBP_PRScs_ARB)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 Systolic blood pressure systolic blood pressure 1,056,790
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003882/ScoringFiles/PGS003882.txt.gz
PGS003188
(ExPRSweb_VitD_29343764-GCST005367_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D amount 1,058,027
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003188/ScoringFiles/PGS003188.txt.gz
PGS003203
(ExPRSweb_VitD_29343764-GCST005367_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D amount 1,058,756
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003203/ScoringFiles/PGS003203.txt.gz
PGS004327
(X4194.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Pulse rate heart rate 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004327/ScoringFiles/PGS004327.txt.gz
PGS004328
(X30600.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Albumin serum albumin amount 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004328/ScoringFiles/PGS004328.txt.gz
PGS004329
(X30620.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Alanine aminotransferase (U/L) serum alanine aminotransferase amount 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004329/ScoringFiles/PGS004329.txt.gz
PGS004330
(X30650.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Aspartate aminotransferase (U/L) aspartate aminotransferase measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004330/ScoringFiles/PGS004330.txt.gz
PGS004331
(X30670.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Urea (mmol/L) urea measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004331/ScoringFiles/PGS004331.txt.gz
PGS004332
(X30680.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Calcium (mmol/L) calcium measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004332/ScoringFiles/PGS004332.txt.gz
PGS004333
(X30690.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Cholesterol (mmol/L) total cholesterol measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004333/ScoringFiles/PGS004333.txt.gz
PGS004334
(X30700.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Creatinine (umol/L) serum creatinine amount 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004334/ScoringFiles/PGS004334.txt.gz
PGS004335
(X30710.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 C-reactive protein (mg/L) C-reactive protein measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004335/ScoringFiles/PGS004335.txt.gz
PGS004336
(X30730.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Gamma glutamyltransferase (U/L) serum gamma-glutamyl transferase measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004336/ScoringFiles/PGS004336.txt.gz
PGS004337
(X30750.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Glycated haemoglobin (mmol/mol) HbA1c measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004337/ScoringFiles/PGS004337.txt.gz
PGS004338
(X30770.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 IGF-1 (nmol/L) IGF-1 measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004338/ScoringFiles/PGS004338.txt.gz
PGS004339
(X30810.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Phosphate (mmol/L) phosphate measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004339/ScoringFiles/PGS004339.txt.gz
PGS004340
(X30830.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 SHBG (nmol/L) sex hormone-binding globulin 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004340/ScoringFiles/PGS004340.txt.gz
PGS004341
(X30860.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Total protein (g/L) total blood protein measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004341/ScoringFiles/PGS004341.txt.gz
PGS004342
(X30870.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Triglycerides (mmol/L) triglyceride measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004342/ScoringFiles/PGS004342.txt.gz
PGS004343
(X30880.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Urate (umol/L) urate measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004343/ScoringFiles/PGS004343.txt.gz
PGS004344
(X30890.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Vitamin D (nmol/L) vitamin D amount 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004344/ScoringFiles/PGS004344.txt.gz
PGS004345
(X30000.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 White blood cell (leukocyte) count leukocyte quantity 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004345/ScoringFiles/PGS004345.txt.gz
Showing 4001 to 4050 of 5134 rows