Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003065
(ExPRSweb_Smoking_SmokingInitiation_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 17,138
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003065/ScoringFiles/PGS003065.txt.gz
PGS003066
(ExPRSweb_Smoking_SmokingInitiation_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 39,469
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003066/ScoringFiles/PGS003066.txt.gz
PGS003067
(ExPRSweb_Smoking_SmokingInitiation_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 244
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003067/ScoringFiles/PGS003067.txt.gz
PGS003068
(ExPRSweb_Smoking_SmokingInitiation_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 1,110,662
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003068/ScoringFiles/PGS003068.txt.gz
PGS001129
(GBE_BIN_FC30022506)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Smoking status (ever vs never smokers) smoking status measurement 974
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001129/ScoringFiles/PGS001129.txt.gz
PGS001054
(GBE_BIN1210)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Snoring snoring measurement 7,407
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001054/ScoringFiles/PGS001054.txt.gz
PGS002006
(portability-PLR_snoring)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Snoring snoring measurement 33,917
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002006/ScoringFiles/PGS002006.txt.gz
PGS002225
(portability-ldpred2_snoring)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Snoring snoring measurement 913,306
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002225/ScoringFiles/PGS002225.txt.gz
PGS002007
(portability-PLR_sodium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sodium in urine sodium measurement 37,568
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002007/ScoringFiles/PGS002007.txt.gz
PGS002226
(portability-ldpred2_sodium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sodium in urine sodium measurement 922,972
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002226/ScoringFiles/PGS002226.txt.gz
PGS000695
(snpnet.Sodium_in_urine)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Sodium in urine [mmol/L] urinary metabolite measurement,
sodium measurement		 5,833
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz - Check Terms/Licenses
PGS001529
(GBE_INI3146)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Speed of sound through heel heel bone mineral density 13,172
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001529/ScoringFiles/PGS001529.txt.gz
PGS001957
(portability-PLR_log_heel_SoS)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Speed of sound through heel velocity of sound measurement 65,064
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001957/ScoringFiles/PGS001957.txt.gz
PGS002175
(portability-ldpred2_log_heel_SoS)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Speed of sound through heel velocity of sound measurement 724,667
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002175/ScoringFiles/PGS002175.txt.gz
PGS003537
(cont-decay-log_heel_SoS)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Speed of sound through heel velocity of sound measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003537/ScoringFiles/PGS003537.txt.gz
PGS001530
(GBE_INI4103)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Speed of sound through heel (L) heel bone mineral density 8,419
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001530/ScoringFiles/PGS001530.txt.gz
PGS001531
(GBE_INI4122)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Speed of sound through heel (R) heel bone mineral density 8,912
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001531/ScoringFiles/PGS001531.txt.gz
PGS001099
(GBE_INI5085)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Spherical power (left eye) refractive error measurement 6,639
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001099/ScoringFiles/PGS001099.txt.gz
PGS001100
(GBE_INI5084)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Spherical power (right eye) refractive error measurement 7,350
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001100/ScoringFiles/PGS001100.txt.gz
PGS000283
(SPON1)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Spondin-1 (SPON1) serum levels blood protein amount 552,703
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000283/ScoringFiles/PGS000283.txt.gz
PGS000197
(G-PROB_SpA)
 PGP000081 |
Knevel R et al. Sci Transl Med (2020)
 Spondyloarthroparthy spondyloarthropathy 31
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000197/ScoringFiles/PGS000197.txt.gz
PGS004899
(PRS_SCAD)
 PGP000629 |
Saw J et al. Nat Commun (2020)
 Spontaneous coronary artery dissection spontaneous coronary artery dissection 7
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004899/ScoringFiles/PGS004899.txt.gz
PGS000120
(SCC10)
 PGP000055 |
Fritsche LG et al. PLoS Genet (2019)
 Squamous cell carcinoma squamous cell carcinoma 10
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000120/ScoringFiles/PGS000120.txt.gz
PGS000460
(PRSWEB_PHECODE172.22_20001-1062_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 4,279,140
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000460/ScoringFiles/PGS000460.txt.gz
PGS000461
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000461/ScoringFiles/PGS000461.txt.gz
PGS000462
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000462/ScoringFiles/PGS000462.txt.gz
PGS000463
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000463/ScoringFiles/PGS000463.txt.gz
PGS000464
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000464/ScoringFiles/PGS000464.txt.gz
PGS000465
(PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 10
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000465/ScoringFiles/PGS000465.txt.gz
PGS000466
(PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 10
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000466/ScoringFiles/PGS000466.txt.gz
PGS000467
(PRSWEB_PHECODE172.22_cSCC-Chahal_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000467/ScoringFiles/PGS000467.txt.gz
PGS000468
(PRSWEB_PHECODE172.22_cSCC-Chahal_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 9
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000468/ScoringFiles/PGS000468.txt.gz
PGS000731
(PRS_SCC)
 PGP000138 |
Fontanillas P et al. Nat Commun (2021)
 Squamous cell carcinoma squamous cell carcinoma 14
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000731/ScoringFiles/PGS000731.txt.gz - Check Terms/Licenses
PGS005209
(SCC_PRS)
 PGP000729 |
Gibson TM et al. Nat Med (2024)
 Squamous cell carcinoma squamous cell carcinoma 20
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005209/ScoringFiles/PGS005209.txt.gz
PGS000284
(ST2)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 ST2 protein (ST2) serum levels blood protein amount 552,006
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000284/ScoringFiles/PGS000284.txt.gz
PGS001229
(GBE_INI50)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Standing height body height 51,209
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001229/ScoringFiles/PGS001229.txt.gz
PGS001929
(portability-PLR_height)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Standing height body height 156,514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001929/ScoringFiles/PGS001929.txt.gz
PGS002146
(portability-ldpred2_height)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Standing height body height 922,538
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002146/ScoringFiles/PGS002146.txt.gz
PGS003514
(cont-decay-height)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Standing height body height 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003514/ScoringFiles/PGS003514.txt.gz
PGS003895
(INI50)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Standing height body height 62,419
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003895/ScoringFiles/PGS003895.txt.gz
PGS004211
(height_1)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Standing height body height 21,950
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004211/ScoringFiles/PGS004211.txt.gz
PGS004212
(height_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Standing height body height 27,779
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004212/ScoringFiles/PGS004212.txt.gz
PGS004213
(height_3)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Standing height body height 21,984
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004213/ScoringFiles/PGS004213.txt.gz
PGS004214
(height_4)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Standing height body height 23,686
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004214/ScoringFiles/PGS004214.txt.gz
PGS004215
(height_5)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Standing height body height 22,938
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004215/ScoringFiles/PGS004215.txt.gz
PGS004407
(X50.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Standing height body height 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004407/ScoringFiles/PGS004407.txt.gz
PGS001117
(GBE_BIN_FC10002986)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Started insulin within one year diagnosis of diabetes insulin use measurement 68
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001117/ScoringFiles/PGS001117.txt.gz
PGS000282
(SCF)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Stem cell factor (SCF) serum levels blood protein amount 552,420
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000282/ScoringFiles/PGS000282.txt.gz
PGS005161
(PRS-GC)
 PGP000711 |
Zhu M et al. PLoS Med (2025)
 Stomach cancer gastric cancer 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005161/ScoringFiles/PGS005161.txt.gz
PGS002232
(STLFRQPGS)
 PGP000265 |
Bonfiglio F et al. Cell Genom (2021)
 Stool Frequency bowel opening frequency 263,279
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002232/ScoringFiles/PGS002232.txt.gz
Showing 4201 to 4250 of 5332 rows