Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004127
(pt_clump_nested.CV.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 246
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004127/ScoringFiles/PGS004127.txt.gz
PGS001692
(GBE_INI25709)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract cingulate gyrus part of cingulum (R) neuroimaging measurement,
brain volume		 245
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001692/ScoringFiles/PGS001692.txt.gz
PGS012517
(LDL)
 PGP000786 |
Huang YJ et al. Nat Commun (2026)
 LDL cholesterol low density lipoprotein cholesterol measurement 245
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS012517/ScoringFiles/PGS012517.txt.gz
PGS001551
(GBE_INI25839)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Cingulate Gyrus, anterior division (R) neuroimaging measurement,
grey matter volume measurement		 244
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001551/ScoringFiles/PGS001551.txt.gz
PGS003067
(ExPRSweb_Smoking_SmokingInitiation_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Smoking status smoking status measurement 244
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003067/ScoringFiles/PGS003067.txt.gz
PGS001375
(GBE_INI22426)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Average heart rate heart rate 243
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001375/ScoringFiles/PGS001375.txt.gz
PGS000927
(GBE_HC1158)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other dermatitis (time-to-event) dermatitis 242
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000927/ScoringFiles/PGS000927.txt.gz
PGS001843
(portability-PLR_443.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Peripheral vascular disease, unspecified peripheral vascular disease 242
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001843/ScoringFiles/PGS001843.txt.gz
PGS003438
(PRS241_CAD)
 PGP000440 |
Marston NA et al. JAMA Cardiol (2023)
 Coronary artery disease coronary artery disorder 241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003438/ScoringFiles/PGS003438.txt.gz
PGS004224
(GRS241_CKD)
 PGP000524 |
Lan R et al. Tob Induc Dis (2023)
 Chronic kidney disease chronic kidney disease 241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004224/ScoringFiles/PGS004224.txt.gz
PGS002588
(disease_DERMATOLOGY.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Dermatologic diseases skin disorder 240
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002588/ScoringFiles/PGS002588.txt.gz
PGS005321
(SBP_PRS)
 PGP000766 |
Türkmen D et al. Pharmacogenomics J (2024)
 Systolic blood pressure systolic blood pressure 240
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005321/ScoringFiles/PGS005321.txt.gz
PGS000990
(GBE_HC878)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Retinal detachments and breaks (time-to-event) retinal break,
retinal detachment		 237
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000990/ScoringFiles/PGS000990.txt.gz
PGS001580
(GBE_INI25860)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Occipital Fusiform Gyrus (L) neuroimaging measurement,
grey matter volume measurement		 235
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001580/ScoringFiles/PGS001580.txt.gz
PGS000311
(GRS234_TC)
 PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
 Total cholesterol total cholesterol measurement 234
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000311/ScoringFiles/PGS000311.txt.gz
PGS003260
(ExPRSweb_Creatine_eGFRcrea-overall-IV-2GC_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 234
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003260/ScoringFiles/PGS003260.txt.gz
PGS003261
(ExPRSweb_Creatine_eGFRcrea-overall-IV-2GC_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine level		 234
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003261/ScoringFiles/PGS003261.txt.gz
PGS002796
(GRS232_Eur)
 PGP000379 |
Shi Z et al. Eur Urol Open Sci (2022)
 Prostate cancer prostate carcinoma 232
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002796/ScoringFiles/PGS002796.txt.gz
PGS002833
(ExPRSweb_Alcohol_DrinksPerWeek_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption quality 232
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002833/ScoringFiles/PGS002833.txt.gz
PGS000770
(PRS231)
 PGP000177 |
de Toro-Martín J et al. Front Genet (2019)
 Body mass index (BMI) body mass index 231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000770/ScoringFiles/PGS000770.txt.gz
PGS001688
(GBE_INI25704)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA ISOVF in tract acoustic radiation (L) neuroimaging measurement,
brain volume		 231
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001688/ScoringFiles/PGS001688.txt.gz
PGS001806
(portability-PLR_187.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Malignant neoplasm of testis testicular neoplasm 231
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001806/ScoringFiles/PGS001806.txt.gz
PGS003708
(L_presubiculum_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left presubiculum body volume presubiculum volume 231
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003708/ScoringFiles/PGS003708.txt.gz
PGS003825
(TC_EAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 230
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003825/ScoringFiles/PGS003825.txt.gz
PGS000345
(PRS229_BC)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Breast cancer breast carcinoma 229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000345/ScoringFiles/PGS000345.txt.gz
PGS000658
(PRS-TC)
 PGP000121 |
Tam CHT et al. Genome Med (2021)
 Total cholesterol total cholesterol measurement 229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000658/ScoringFiles/PGS000658.txt.gz
PGS003097
(ExPRSweb_T2D_29358691-GCST005413_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003097/ScoringFiles/PGS003097.txt.gz
PGS000040
(GRS_CeD)
 PGP000028 |
Abraham G et al. PLoS Genet (2014)
 Coeliac disease celiac disease 228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000040/ScoringFiles/PGS000040.txt.gz
PGS001042
(GBE_HC645)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Thyrotoxicosis [hyperthyroidism] (time-to-event) thyrotoxicosis 226
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001042/ScoringFiles/PGS001042.txt.gz
PGS000175
(mchc)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Mean corpuscular hemoglobin concentration mean corpuscular hemoglobin concentration 224
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000175/ScoringFiles/PGS000175.txt.gz
PGS000838
(Fasting_Glucose)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Fasting glucose blood glucose amount 224
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000838/ScoringFiles/PGS000838.txt.gz
PGS000115
(LDL-C_20)
 PGP000053 |
Trinder M et al. JAMA Cardiol (2020)
 LDL cholesterol low density lipoprotein cholesterol measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000115/ScoringFiles/PGS000115.txt.gz
PGS000836
(F-INS)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Fasting insulin blood insulin amount 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000836/ScoringFiles/PGS000836.txt.gz
PGS000840
(Fasting_Proinsulin)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Fasting Proinsulin proinsulin measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000840/ScoringFiles/PGS000840.txt.gz
PGS001985
(portability-PLR_logMAR)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 logMAR in round (left/right) visual acuity measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001985/ScoringFiles/PGS001985.txt.gz
PGS004914
(HDL-C_PGS)
 PGP000647 |
Trinder M et al. Arterioscler Thromb Vasc Biol (2019)
 HDL cholesterol high density lipoprotein cholesterol measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004914/ScoringFiles/PGS004914.txt.gz
PGS004915
(LDL-C_PGS)
 PGP000647 |
Trinder M et al. Arterioscler Thromb Vasc Biol (2019)
 LDL cholesterol low density lipoprotein cholesterol measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004915/ScoringFiles/PGS004915.txt.gz
PGS004916
(Triglycerides_PGS)
 PGP000647 |
Trinder M et al. Arterioscler Thromb Vasc Biol (2019)
 Triglycerides triglyceride measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004916/ScoringFiles/PGS004916.txt.gz
PGS003112
(ExPRSweb_T2D_29358691-GCST005413_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 222
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003112/ScoringFiles/PGS003112.txt.gz
PGS000868
(T2D_221)
 PGP000214 |
Aksit MA et al. J Clin Endocrinol Metab (2020)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 221
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000868/ScoringFiles/PGS000868.txt.gz
PGS001613
(GBE_INI25891)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Ventral Striatum (R) neuroimaging measurement,
grey matter volume measurement		 221
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001613/ScoringFiles/PGS001613.txt.gz
PGS004657
(logTG_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 221
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004657/ScoringFiles/PGS004657.txt.gz
PGS000834
(CIR)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Corrected insulin response (at 30mins during OGTT) insulin response measurement 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000834/ScoringFiles/PGS000834.txt.gz
PGS001020
(GBE_BIN_FC50006160)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Attending social / leisure activities (regular attendance at an adult education class) social interaction measurement 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001020/ScoringFiles/PGS001020.txt.gz
PGS001330
(GBE_HC1101)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Crohn's disease [regional enteritis] (time-to-event) Crohn disease 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001330/ScoringFiles/PGS001330.txt.gz
PGS001390
(GBE_HC1084)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Duodenal ulcer (time-to-event) duodenal ulcer 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001390/ScoringFiles/PGS001390.txt.gz
PGS000837
(ISI)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Insulin sensitivity index insulin sensitivity measurement 219
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000837/ScoringFiles/PGS000837.txt.gz
PGS000839
(2H_Glucose)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Two hour glucose during OGTT glucose tolerance test 219
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000839/ScoringFiles/PGS000839.txt.gz
PGS003820
(TC_AFR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 218
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003820/ScoringFiles/PGS003820.txt.gz
PGS000493
(PRSWEB_PHECODE174.1_Onco-iCOGS-ER-negative-BRCA_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 217
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000493/ScoringFiles/PGS000493.txt.gz
Showing 4251 to 4300 of 5385 rows