Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004024
(ldpred2.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 958,046
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004024/ScoringFiles/PGS004024.txt.gz
PGS004039
(ldpred2.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 958,046
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004039/ScoringFiles/PGS004039.txt.gz
PGS004052
(megaprs.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 800,598
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004052/ScoringFiles/PGS004052.txt.gz
PGS004068
(megaprs.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 800,598
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004068/ScoringFiles/PGS004068.txt.gz
PGS004082
(prscs.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,043,329
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004082/ScoringFiles/PGS004082.txt.gz
PGS004106
(pt_clump.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 35
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004106/ScoringFiles/PGS004106.txt.gz
PGS004122
(pt_clump_nested.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 297
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004122/ScoringFiles/PGS004122.txt.gz
PGS004136
(sbayesr.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 930,497
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004136/ScoringFiles/PGS004136.txt.gz
PGS004152
(UKBB_EnsPGS.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,071,786
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004152/ScoringFiles/PGS004152.txt.gz
PGS004310
(GenoBoost_type_2_diabetes_0)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 7,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004310/ScoringFiles/PGS004310.txt.gz
PGS004311
(GenoBoost_type_2_diabetes_1)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 4,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004311/ScoringFiles/PGS004311.txt.gz
PGS004312
(GenoBoost_type_2_diabetes_2)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 7,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004312/ScoringFiles/PGS004312.txt.gz
PGS004313
(GenoBoost_type_2_diabetes_3)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 8,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004313/ScoringFiles/PGS004313.txt.gz
PGS004314
(GenoBoost_type_2_diabetes_4)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 6,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004314/ScoringFiles/PGS004314.txt.gz
PGS004499
(disease.T2D.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004499/ScoringFiles/PGS004499.txt.gz
PGS004569
(meta.T2D.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004569/ScoringFiles/PGS004569.txt.gz
PGS004602
(PRS424_T2D)
 PGP000580 |
Zhuang P et al. Diabetes Care (2021)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 424
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004602/ScoringFiles/PGS004602.txt.gz
PGS004615
(PGS_weights_TMM_All_of_1group)
 PGP000593 |
Ojima T et al. Nat Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 855,161
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004615/ScoringFiles/PGS004615.txt.gz
PGS004616
(PGS_weights_TMM_HighBMI_of_2groups)
 PGP000593 |
Ojima T et al. Nat Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 855,161
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004616/ScoringFiles/PGS004616.txt.gz
PGS004617
(PGS_weights_TMM_LowBMI_of_2groups)
 PGP000593 |
Ojima T et al. Nat Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 855,161
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004617/ScoringFiles/PGS004617.txt.gz
PGS004618
(PGS_weights_BBJ2nd_All_of_1group)
 PGP000593 |
Ojima T et al. Nat Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 728,824
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004618/ScoringFiles/PGS004618.txt.gz
PGS004619
(PGS_weights_BBJ2nd_HighBMI_of_2groups)
 PGP000593 |
Ojima T et al. Nat Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 728,824
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004619/ScoringFiles/PGS004619.txt.gz
PGS004620
(PGS_weights_BBJ2nd_LowBMI_of_2groups)
 PGP000593 |
Ojima T et al. Nat Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 728,824
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004620/ScoringFiles/PGS004620.txt.gz
PGS004837
(t2d_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 3,306,136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004837/ScoringFiles/PGS004837.txt.gz
PGS004838
(t2d_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 6,586,458
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004838/ScoringFiles/PGS004838.txt.gz
PGS004839
(t2d_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 4,594,694
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004839/ScoringFiles/PGS004839.txt.gz
PGS004840
(t2d_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 6,586,458
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004840/ScoringFiles/PGS004840.txt.gz
PGS004859
(T2D_PRS_CS)
 PGP000605 |
Deutsch AJ et al. Diabetes Care (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,108,235
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004859/ScoringFiles/PGS004859.txt.gz
PGS004868
(T2DPGS)
 PGP000617 |
Yun JS et al. Cardiovasc Diabetol (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 6,580,804
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004868/ScoringFiles/PGS004868.txt.gz
PGS004870
(INTERVENE_MegaPRS_T2D)
 PGP000618 |
Jermy B et al. Nat Commun (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 930,506
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004870/ScoringFiles/PGS004870.txt.gz
PGS004887
(T2D_gePGS)
 PGP000619 |
Mandla R et al. Genome Med (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,117,628
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004887/ScoringFiles/PGS004887.txt.gz
PGS004923
(T2D_metaGRS)
 PGP000656 |
Ritchie SC et al. medRxiv (2024)
|Pre		 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,349,896
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004923/ScoringFiles/PGS004923.txt.gz
PGS001074
(GBE_BIN_FC30006164)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Types of physical activity in last 4 weeks (other exercises) physical activity measurement 3,846
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001074/ScoringFiles/PGS001074.txt.gz
PGS001107
(GBE_BIN30030510)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 UACR [> 30 mg/g] urinary albumin to creatinine ratio 1,040
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001107/ScoringFiles/PGS001107.txt.gz
PGS001306
(GBE_HC201)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ulcerative colitis ulcerative colitis 179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001306/ScoringFiles/PGS001306.txt.gz
PGS001855
(portability-PLR_555.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ulcerative colitis ulcerative colitis 1,505
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001855/ScoringFiles/PGS001855.txt.gz
PGS002066
(portability-ldpred2_555.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ulcerative colitis ulcerative colitis 566,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002066/ScoringFiles/PGS002066.txt.gz
PGS004253
(uc_ldpred2)
 PGP000545 |
Middha P et al. Nat Commun (2024)
 Ulcerative colitis ulcerative colitis 744,575
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004253/ScoringFiles/PGS004253.txt.gz
PGS001307
(GBE_HC1102)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Ulcerative colitis (time-to-event) ulcerative colitis 809
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001307/ScoringFiles/PGS001307.txt.gz
PGS000925
(GBE_HC1020)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Unspecified acute lower respiratory infection (time-to-event) respiratory tract infectious disorder 402
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000925/ScoringFiles/PGS000925.txt.gz
PGS000946
(GBE_HC713)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Unspecified dementia (time-to-event) dementia 9
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000946/ScoringFiles/PGS000946.txt.gz
PGS001329
(GBE_HC652)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Unspecified diabetes mellitus (time-to-event) diabetes mellitus 2,270
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001329/ScoringFiles/PGS001329.txt.gz
PGS004320
(PRS16_UGI)
 PGP000551 |
Liu W et al. Nutrients (2023)
 Upper gastrointestinal cancer Digestive System Carcinoma 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004320/ScoringFiles/PGS004320.txt.gz
PGS002010
(portability-PLR_urate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urate urate measurement 75,102
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002010/ScoringFiles/PGS002010.txt.gz
PGS002229
(portability-ldpred2_urate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urate urate measurement 698,001
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002229/ScoringFiles/PGS002229.txt.gz
PGS003572
(cont-decay-urate)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Urate urate measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003572/ScoringFiles/PGS003572.txt.gz
PGS003991
(dbslmm.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 1,005,456
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003991/ScoringFiles/PGS003991.txt.gz
PGS004007
(lassosum.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 19,101
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004007/ScoringFiles/PGS004007.txt.gz
PGS004019
(lassosum.CV.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 56,575
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004019/ScoringFiles/PGS004019.txt.gz
PGS004033
(ldpred2.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 865,644
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004033/ScoringFiles/PGS004033.txt.gz
Showing 4351 to 4400 of 4857 rows