Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000293
(U-PAR)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Urokinase plasminogen activator surface receptor (U-PAR) serum levels blood protein amount 552,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000293/ScoringFiles/PGS000293.txt.gz
PGS000980
(GBE_BIN_FC40002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (always) sun exposure measurement 2,594
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000980/ScoringFiles/PGS000980.txt.gz
PGS000982
(GBE_BIN_FC10002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (never / rarely) sun exposure measurement 1,141
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000982/ScoringFiles/PGS000982.txt.gz
PGS001993
(portability-PLR_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 17,282
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001993/ScoringFiles/PGS001993.txt.gz
PGS002210
(portability-ldpred2_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 821,654
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002210/ScoringFiles/PGS002210.txt.gz
PGS001535
(GBE_BIN_FC20002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun/uv protection (Sometimes) sun exposure measurement 309
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001535/ScoringFiles/PGS001535.txt.gz
PGS001075
(GBE_INI924)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Usual walking pace physical activity measurement 7,535
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001075/ScoringFiles/PGS001075.txt.gz
PGS001795
(1kgeur_gbmi_leaveUKBBout_UtC_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Uterine cancer uterine carcinoma 911,692
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001795/ScoringFiles/PGS001795.txt.gz
PGS003381
(best_UCEC)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Uterine endometrial carcinoma endometrial carcinoma 529,365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003381/ScoringFiles/PGS003381.txt.gz
PGS001032
(GBE_HC31)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Uterine fibroids uterine fibroid 161
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001032/ScoringFiles/PGS001032.txt.gz
PGS002263
(PRS_UF)
 PGP000291 |
Piekos JA et al. Hum Genet (2022)
 Uterine fibroids uterine fibroid 4,457
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002263/ScoringFiles/PGS002263.txt.gz
PGS001068
(GBE_INI1548)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Variation in diet diet measurement 1,353
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001068/ScoringFiles/PGS001068.txt.gz
PGS000937
(GBE_HC401)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Varicose veins Varicose veins 2,603
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000937/ScoringFiles/PGS000937.txt.gz
PGS001845
(portability-PLR_454)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Varicose veins Varicose veins 15,748
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001845/ScoringFiles/PGS001845.txt.gz
PGS002057
(portability-ldpred2_454)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Varicose veins Varicose veins 760,630
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002057/ScoringFiles/PGS002057.txt.gz
PGS000938
(GBE_HC990)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Varicose veins of lower extremities (time-to-event) Varicose veins 2,563
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000938/ScoringFiles/PGS000938.txt.gz
PGS001179
(GBE_HC711)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vascular dementia (time-to-event) vascular dementia 7
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001179/ScoringFiles/PGS001179.txt.gz
PGS000294
(VEGF-A)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Vascular endothelial growth factor A (VEGF-A) serum levels blood protein amount 552,070
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000294/ScoringFiles/PGS000294.txt.gz
PGS000295
(VEGF-D)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Vascular endothelial growth factor D (VEGF-D) serum levels blood protein amount 551,905
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000295/ScoringFiles/PGS000295.txt.gz
PGS001262
(GBE_BIN_FC2006150)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vascular/heart problems diagnosed by doctor Angina angina pectoris 1,852
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001262/ScoringFiles/PGS001262.txt.gz
PGS001317
(GBE_BIN_FC1006150)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vascular/heart problems diagnosed by doctor Heart attack myocardial infarction 1,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001317/ScoringFiles/PGS001317.txt.gz
PGS001335
(GBE_BIN_FC4006150)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vascular/heart problems diagnosed by doctor High BP cardiovascular disease 14,076
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001335/ScoringFiles/PGS001335.txt.gz
PGS001109
(GBE_HC1021)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vasomotor and allergic rhinitis (time-to-event) allergic rhinitis,
vasomotor rhinitis		 1,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001109/ScoringFiles/PGS001109.txt.gz
PGS000043
(PRS_VTE)
 PGP000030 |
Klarin D et al. Nat Genet (2019)
 Venous thromboembolism venous thromboembolism 297
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000043/ScoringFiles/PGS000043.txt.gz
PGS001796
(1kgeur_gbmi_leaveUKBBout_VTE_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Venous thromboembolism venous thromboembolism 910,337
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001796/ScoringFiles/PGS001796.txt.gz
PGS002235
(elasticnet_VTE)
 PGP000267 |
Kolin DA et al. Sci Rep (2021)
 Venous thromboembolism venous thromboembolism 36
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002235/ScoringFiles/PGS002235.txt.gz
PGS002772
(Venous_thromboembolism_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Venous thromboembolism venous thromboembolism 1,052,790
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002772/ScoringFiles/PGS002772.txt.gz
PGS002794
(PRS_VTE)
 PGP000375 |
Xie J et al. J Thromb Haemost (2022)
 Venous thromboembolism venous thromboembolism 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002794/ScoringFiles/PGS002794.txt.gz
PGS003332
(PRS_VTE_EUR_GHOUSE)
 PGP000398 |
Ghouse J et al. Nat Genet (2023)
 Venous thromboembolism venous thromboembolism 1,092,045
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003332/ScoringFiles/PGS003332.txt.gz
PGS003456
(PRS273_VTE)
 PGP000449 |
Folsom AR et al. PLoS One (2023)
 Venous thromboembolism venous thromboembolism 273
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003456/ScoringFiles/PGS003456.txt.gz
PGS004853
(VTE_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Venous thromboembolism venous thromboembolism 828,099
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004853/ScoringFiles/PGS004853.txt.gz
PGS004854
(VTE_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Venous thromboembolism venous thromboembolism 2,268,993
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004854/ScoringFiles/PGS004854.txt.gz
PGS004501
(disease.VTE.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Venous thromboembolism (VTE) venous thromboembolism 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004501/ScoringFiles/PGS004501.txt.gz
PGS004571
(meta.VTE.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Venous thromboembolism (VTE) venous thromboembolism 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004571/ScoringFiles/PGS004571.txt.gz
PGS001981
(portability-PLR_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 6,324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001981/ScoringFiles/PGS001981.txt.gz
PGS002199
(portability-ldpred2_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 705,680
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002199/ScoringFiles/PGS002199.txt.gz
PGS001011
(GBE_HC534)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Viral warts (time-to-event) common wart 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001011/ScoringFiles/PGS001011.txt.gz
PGS002813
(VATadjbmi3_weights_select)
 PGP000391 |
Agrawal S et al. Nat Commun (2022)
 Visceral adipose tissue volumes adjusted for BMI and height visceral adipose tissue quantity 1,125,301
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002813/ScoringFiles/PGS002813.txt.gz
PGS003154
(ExPRSweb_VitB12_100013-irnt_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 314,838
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003154/ScoringFiles/PGS003154.txt.gz
PGS003155
(ExPRSweb_VitB12_100013-irnt_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 40,176
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003155/ScoringFiles/PGS003155.txt.gz
PGS003156
(ExPRSweb_VitB12_100013-irnt_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 88,908
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003156/ScoringFiles/PGS003156.txt.gz
PGS003157
(ExPRSweb_VitB12_100013-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 10,318,270
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003157/ScoringFiles/PGS003157.txt.gz
PGS003158
(ExPRSweb_VitB12_100013-irnt_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 1,113,819
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003158/ScoringFiles/PGS003158.txt.gz
PGS003159
(ExPRSweb_VitB12_100013-raw_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 313,902
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003159/ScoringFiles/PGS003159.txt.gz
PGS003160
(ExPRSweb_VitB12_100013-raw_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 83,714
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003160/ScoringFiles/PGS003160.txt.gz
PGS003161
(ExPRSweb_VitB12_100013-raw_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 190,297
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003161/ScoringFiles/PGS003161.txt.gz
PGS003162
(ExPRSweb_VitB12_100013-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 10,318,272
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003162/ScoringFiles/PGS003162.txt.gz
PGS003163
(ExPRSweb_VitB12_100013-raw_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 1,113,819
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003163/ScoringFiles/PGS003163.txt.gz
PGS003164
(ExPRSweb_VitB12_Wood-et-al-2013-1000G_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 263,612
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003164/ScoringFiles/PGS003164.txt.gz
PGS003165
(ExPRSweb_VitB12_Wood-et-al-2013-1000G_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 9
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003165/ScoringFiles/PGS003165.txt.gz
Showing 4701 to 4750 of 5134 rows