Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004830
(sbp_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 4,805,129
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004830/ScoringFiles/PGS004830.txt.gz
PGS003578
(MTAG.All.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,786,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003578/ScoringFiles/PGS003578.txt.gz
PGS003579
(MTAG.AllDep.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,786,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003579/ScoringFiles/PGS003579.txt.gz
PGS003580
(MTAG.AllDepEnvs.LifetimeMDD)
 PGP000461 |
Dahl A et al. bioRxiv (2022)
|Pre		 Major Depressive Disorder (Lifetime) major depressive disorder 4,786,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003580/ScoringFiles/PGS003580.txt.gz
PGS004745
(cad_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Coronary artery disease coronary artery disease 4,769,577
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004745/ScoringFiles/PGS004745.txt.gz
PGS004942
(IS_MetaPRS)
 PGP000668 |
China Kadoorie Biobank Collaborative Group. et al. Nat Hum Behav (2024)
 Ischemic stroke Ischemic stroke 4,765,243
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004942/ScoringFiles/PGS004942.txt.gz
PGS003227
(ExPRSweb_eGFR_20171017-MW-eGFR-EA_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate glomerular filtration rate 4,728,961
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003227/ScoringFiles/PGS003227.txt.gz
PGS004827
(RDW_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red cell distribution width Red cell distribution width 4,698,860
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004827/ScoringFiles/PGS004827.txt.gz
PGS003222
(ExPRSweb_eGFR_20171017-MW-eGFR-EA_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate glomerular filtration rate 4,656,243
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003222/ScoringFiles/PGS003222.txt.gz
PGS004839
(t2d_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 4,594,694
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004839/ScoringFiles/PGS004839.txt.gz
PGS004777
(hdl_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 4,547,847
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004777/ScoringFiles/PGS004777.txt.gz
PGS004735
(bmi_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Body mass index (BMI) body mass index 4,536,322
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004735/ScoringFiles/PGS004735.txt.gz
PGS004752
(current_smoker_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 4,496,606
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004752/ScoringFiles/PGS004752.txt.gz
PGS004754
(current_smoker_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Current smoker smoking status measurement 4,496,606
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004754/ScoringFiles/PGS004754.txt.gz
PGS004799
(migraine_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Migraine migraine disorder 4,319,950
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004799/ScoringFiles/PGS004799.txt.gz
PGS000460
(PRSWEB_PHECODE172.22_20001-1062_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Squamous cell carcinoma squamous cell carcinoma 4,279,140
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000460/ScoringFiles/PGS000460.txt.gz
PGS004713
(ALP_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 4,268,599
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004713/ScoringFiles/PGS004713.txt.gz
PGS004757
(dbp_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Diastolic blood pressure diastolic blood pressure 4,215,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004757/ScoringFiles/PGS004757.txt.gz
PGS004806
(Neutrophils_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Neutrophil count neutrophil count 4,190,918
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004806/ScoringFiles/PGS004806.txt.gz
PGS004762
(Eosinophils_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Eosinophil count eosinophil count 4,143,233
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004762/ScoringFiles/PGS004762.txt.gz
PGS004857
(WBC_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 4,141,649
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004857/ScoringFiles/PGS004857.txt.gz
PGS004758
(dbp_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Diastolic blood pressure diastolic blood pressure 4,139,034
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004758/ScoringFiles/PGS004758.txt.gz
PGS004843
(tc_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total cholesterol total cholesterol measurement 4,136,795
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004843/ScoringFiles/PGS004843.txt.gz
PGS004734
(bmi_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Body mass index (BMI) body mass index 4,081,121
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004734/ScoringFiles/PGS004734.txt.gz
PGS004736
(bmi_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Body mass index (BMI) body mass index 4,081,121
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004736/ScoringFiles/PGS004736.txt.gz
PGS004823
(RBC_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red blood cell count erythrocyte count 4,047,636
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004823/ScoringFiles/PGS004823.txt.gz
PGS004847
(tg_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Triglycerides triglyceride measurement 4,047,325
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004847/ScoringFiles/PGS004847.txt.gz
PGS004798
(migraine_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Migraine migraine disorder 3,984,158
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004798/ScoringFiles/PGS004798.txt.gz
PGS004725
(asthma_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Asthma asthma 3,972,232
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004725/ScoringFiles/PGS004725.txt.gz
PGS004784
(HLD_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hypercholesterolemia Hypercholesterolemia 3,948,507
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004784/ScoringFiles/PGS004784.txt.gz
PGS004793
(ldl_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 3,946,021
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004793/ScoringFiles/PGS004793.txt.gz
PGS004770
(Hb_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hemoglobin hemoglobin measurement 3,913,042
-
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004770/ScoringFiles/PGS004770.txt.gz
PGS004703
(a1c_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 HbA1c HbA1c measurement 3,872,159
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004703/ScoringFiles/PGS004703.txt.gz
PGS004831
(sbp_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 3,827,774
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004831/ScoringFiles/PGS004831.txt.gz
PGS004763
(Eosinophils_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Eosinophil count eosinophil count 3,749,971
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004763/ScoringFiles/PGS004763.txt.gz
PGS004941
(CAD_MetaPRS)
 PGP000668 |
China Kadoorie Biobank Collaborative Group. et al. Nat Hum Behav (2024)
 Coronary artery disease coronary artery disease 3,711,629
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004941/ScoringFiles/PGS004941.txt.gz
PGS004738
(breast_cancer_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Breast cancer breast carcinoma 3,666,321
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004738/ScoringFiles/PGS004738.txt.gz
PGS004737
(breast_cancer_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Breast cancer breast carcinoma 3,666,245
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004737/ScoringFiles/PGS004737.txt.gz
PGS004743
(cad_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Coronary artery disease coronary artery disease 3,606,321
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004743/ScoringFiles/PGS004743.txt.gz
PGS004706
(afib_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Atrial Fibrillation atrial fibrillation 3,576,958
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004706/ScoringFiles/PGS004706.txt.gz
PGS004705
(afib_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Atrial Fibrillation atrial fibrillation 3,575,124
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004705/ScoringFiles/PGS004705.txt.gz
PGS000819
(PRS_DR)
 PGP000203 |
Forrest IS et al. Hum Mol Genet (2021)
 Diabetic retinopathy diabetic retinopathy 3,537,914
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000819/ScoringFiles/PGS000819.txt.gz
PGS004807
(Neutrophils_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Neutrophil count neutrophil count 3,498,605
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004807/ScoringFiles/PGS004807.txt.gz
PGS004230
(Impulsivity_combined)
 PGP000528 |
Deng WQ et al. Genes Brain Behav (2023)
 Impulsivity behavioural disinhibition measurement 3,465,707
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004230/ScoringFiles/PGS004230.txt.gz
PGS000748
(PRS_DE)
 PGP000152 |
Gola D et al. Circ Genom Precis Med (2020)
 Coronary artery disease coronary artery disease 3,423,987
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000748/ScoringFiles/PGS000748.txt.gz
PGS004837
(t2d_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 3,306,136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004837/ScoringFiles/PGS004837.txt.gz
PGS002288
(PRS_POP)
 PGP000314 |
Pujol-Gualdo N et al. Nat Commun (2022)
 Pelvic organ prolapse pelvic organ prolapse 3,242,959
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002288/ScoringFiles/PGS002288.txt.gz
PGS000039
(metaGRS_ischaemicstroke)
 PGP000027 |
Abraham G et al. Nat Commun (2019)
 Ischemic stroke stroke,
Ischemic stroke		 3,225,583
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000039/ScoringFiles/PGS000039.txt.gz
PGS004781
(height_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Height body height 3,220,389
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004781/ScoringFiles/PGS004781.txt.gz
PGS004732
(Bilirubin_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Total bilirubin bilirubin measurement 3,030,080
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004732/ScoringFiles/PGS004732.txt.gz
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