Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002831
(ExPRSweb_Alcohol_DrinksPerWeek_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 12,650
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002831/ScoringFiles/PGS002831.txt.gz
PGS002832
(ExPRSweb_Alcohol_DrinksPerWeek_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 27,085
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002832/ScoringFiles/PGS002832.txt.gz
PGS002833
(ExPRSweb_Alcohol_DrinksPerWeek_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 232
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002833/ScoringFiles/PGS002833.txt.gz
PGS002834
(ExPRSweb_Alcohol_DrinksPerWeek_PRSCS_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 1,116,497
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002834/ScoringFiles/PGS002834.txt.gz
PGS002835
(ExPRSweb_Alcohol_DrinksPerWeek_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 524,875
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002835/ScoringFiles/PGS002835.txt.gz
PGS002836
(ExPRSweb_Alcohol_DrinksPerWeek_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 10,706
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002836/ScoringFiles/PGS002836.txt.gz
PGS002837
(ExPRSweb_Alcohol_DrinksPerWeek_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 22,675
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002837/ScoringFiles/PGS002837.txt.gz
PGS002838
(ExPRSweb_Alcohol_DrinksPerWeek_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 137
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002838/ScoringFiles/PGS002838.txt.gz
PGS002839
(ExPRSweb_Alcohol_DrinksPerWeek_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 1,117,376
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002839/ScoringFiles/PGS002839.txt.gz
PGS000203
(GSCAN_DPW_COGA)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Alcohol consumption (drinks per week) alcohol consumption measurement 1,110,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000203/ScoringFiles/PGS000203.txt.gz
PGS000204
(GSCAN_DPW_FT12)
 PGP000084 |
Barr PB et al. Transl Psychiatry (2020)
 Alcohol consumption (drinks per week) alcohol consumption measurement 1,099,480
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000204/ScoringFiles/PGS000204.txt.gz
PGS002752
(Drinks_per_week_prscs)
 PGP000364 |
Mars N et al. Am J Hum Genet (2022)
 Alcohol consumption (drinks per week) alcohol consumption measurement 1,089,551
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002752/ScoringFiles/PGS002752.txt.gz
PGS001901
(portability-PLR_drink_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol drinker status alcohol drinking 1,065
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001901/ScoringFiles/PGS001901.txt.gz
PGS002115
(portability-ldpred2_drink_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol drinker status alcohol drinking 766,714
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002115/ScoringFiles/PGS002115.txt.gz
PGS000704
(HC171)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Alcoholic cirrhosis alcoholic liver cirrhosis 183,271
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000704/ScoringFiles/PGS000704.txt.gz - Check Terms/Licenses
PGS001087
(GBE_QT_FC1001558)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Alcohol intake frequency alcohol consumption measurement 8,353
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001087/ScoringFiles/PGS001087.txt.gz
PGS001934
(portability-PLR_less_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol intake frequency alcohol consumption measurement 50,955
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001934/ScoringFiles/PGS001934.txt.gz
PGS002152
(portability-ldpred2_less_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol intake frequency alcohol consumption measurement 946,965
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002152/ScoringFiles/PGS002152.txt.gz
PGS002738
(PRS_AUD)
 PGP000345 |
Lai D et al. Alcohol Clin Exp Res (2022)
 Alcohol use disorder alcohol dependence 326,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002738/ScoringFiles/PGS002738.txt.gz
PGS002739
(PRS_gene)
 PGP000346 |
Lai D et al. Transl Psychiatry (2022)
 Alcohol use disorder alcohol dependence 858
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002739/ScoringFiles/PGS002739.txt.gz
PGS000815
(GRS290_ALP)
 PGP000201 |
Pazoki R et al. Nat Commun (2021)
 Alkaline phosphatase alkaline phosphatase measurement 290
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000815/ScoringFiles/PGS000815.txt.gz
PGS001939
(portability-PLR_log_ALP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alkaline phosphatase alkaline phosphatase measurement 50,948
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001939/ScoringFiles/PGS001939.txt.gz
PGS002157
(portability-ldpred2_log_ALP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alkaline phosphatase alkaline phosphatase measurement 874,365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002157/ScoringFiles/PGS002157.txt.gz
PGS003521
(cont-decay-log_ALP)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Alkaline phosphatase alkaline phosphatase measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003521/ScoringFiles/PGS003521.txt.gz
PGS004711
(ALP_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 634,277
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004711/ScoringFiles/PGS004711.txt.gz
PGS004712
(ALP_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 1,704,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004712/ScoringFiles/PGS004712.txt.gz
PGS004713
(ALP_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 4,268,599
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004713/ScoringFiles/PGS004713.txt.gz
PGS004714
(ALP_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alkaline phosphatase alkaline phosphatase measurement 1,704,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004714/ScoringFiles/PGS004714.txt.gz
PGS000670
(snpnet.Alkaline_phosphatase)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Alkaline phosphatase [U/L] alkaline phosphatase measurement 18,328
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000670/ScoringFiles/PGS000670.txt.gz - Check Terms/Licenses
PGS000929
(GBE_HC1583)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 All-cause dementia (algorithmically-defined) dementia 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000929/ScoringFiles/PGS000929.txt.gz
PGS000318
(cPRS_F)
 PGP000095 |
Meisner A et al. Am J Hum Genet (2020)
 All-cause mortality (female) age at death,
female		 4,122
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000318/ScoringFiles/PGS000318.txt.gz
PGS000319
(cPRS_M)
 PGP000095 |
Meisner A et al. Am J Hum Genet (2020)
 All-cause mortality (male) age at death,
male		 4,092
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000319/ScoringFiles/PGS000319.txt.gz
PGS000780
(PRS135_allergy)
 PGP000184 |
Clark H et al. Clin Exp Allergy (2019)
 Allergic disease allergic disease 135
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000780/ScoringFiles/PGS000780.txt.gz
PGS000800
(GRSw_SHARE)
 PGP000189 |
Dijk FN et al. J Allergy Clin Immunol (2019)
 Allergic disease allergic disease 133
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000800/ScoringFiles/PGS000800.txt.gz
PGS000810
(wGRS136_Allergy)
 PGP000195 |
Ferreira MA et al. Nat Genet (2017)
 Allergic disease (asthma, hay fever or eczema) allergic disease 136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000810/ScoringFiles/PGS000810.txt.gz
PGS001284
(GBE_BIN_FC10006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever, allergic rhinitis, or eczema) allergic disease 6,755
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001284/ScoringFiles/PGS001284.txt.gz
PGS001286
(GBE_BIN22126)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever or allergic rhinitis) (diagnosed by doctor) allergic disease 466
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001286/ScoringFiles/PGS001286.txt.gz
PGS001283
(GBE_INI3761)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever, rhinitis or eczema) allergic disease 993
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001283/ScoringFiles/PGS001283.txt.gz
PGS001285
(GBE_BIN_FC5006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Allergic disease (hay fever, rhinitis, or eczema) (diagnosed by doctor) allergic disease 7,313
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001285/ScoringFiles/PGS001285.txt.gz
PGS000867
(GRS10_Allergy)
 PGP000213 |
Arabkhazaeli A et al. Pediatr Allergy Immunol (2017)
 Allergy allergic disease 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000867/ScoringFiles/PGS000867.txt.gz
PGS001885
(portability-PLR_960.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Allergy/adverse effect of penicillin drug allergy 95
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001885/ScoringFiles/PGS001885.txt.gz
PGS002097
(portability-ldpred2_960.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Allergy/adverse effect of penicillin drug allergy 742,904
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002097/ScoringFiles/PGS002097.txt.gz
PGS000025
(GRS)
 PGP000015 |
Chouraki V et al. J Alzheimers Dis (2016)
 Alzheimer's disease Alzheimer disease 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000025/ScoringFiles/PGS000025.txt.gz
PGS000026
(PHS)
 PGP000016 |
Desikan RS et al. PLoS Med (2017)
 Alzheimer's disease Alzheimer disease 31
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000026/ScoringFiles/PGS000026.txt.gz
PGS000779
(PGS7_AD)
 PGP000183 |
Zhou X et al. Alzheimers Dement (Amst) (2020)
 Alzheimer's disease Alzheimer disease 7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000779/ScoringFiles/PGS000779.txt.gz
PGS000811
(AD-PRS_39)
 PGP000196 |
Najar J et al. Alzheimers Dement (Amst) (2021)
 Alzheimer's disease Alzheimer disease 39
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000811/ScoringFiles/PGS000811.txt.gz
PGS000812
(AD-PRS_57)
 PGP000196 |
Najar J et al. Alzheimers Dement (Amst) (2021)
 Alzheimer's disease Alzheimer disease 57
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000812/ScoringFiles/PGS000812.txt.gz
PGS000823
(GRS23_AD)
 PGP000207 |
van der Lee SJ et al. Lancet Neurol (2018)
 Alzheimer's disease Alzheimer disease 23
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000823/ScoringFiles/PGS000823.txt.gz
PGS000876
(PRS31_AD)
 PGP000222 |
Leonenko G et al. Ann Clin Transl Neurol (2019)
 Alzheimer's disease Alzheimer disease 31
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000876/ScoringFiles/PGS000876.txt.gz
PGS000898
(PRS39_AD)
 PGP000231 |
de Rojas I et al. Nat Commun (2021)
 Alzheimer's disease Alzheimer disease 40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000898/ScoringFiles/PGS000898.txt.gz
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