Trait: gastric cancer

Trait Information
Identifier MONDO_0001056
Description A primary or metastatic malignant neoplasm involving the stomach. [NCIT: C9331]
Trait categories
Cancer
Digestive system disorder
Synonyms 28 synonyms
  • Ca body - stomach
  • Ca lesser curvature - stomach
  • ca greater curvature of stomach
  • cancer of stomach
  • gastric cancer
  • gastric cancer risk after h. pylori infection
  • gastric cancer, intestinal
  • gastric cancer, somatic
  • gastric neoplasm
  • malignant gastric neoplasm
  • malignant gastric tumor
  • malignant gastric tumour
  • malignant neoplasm of body of stomach
  • malignant neoplasm of lesser curve of stomach
  • malignant neoplasm of stomach
  • malignant neoplasm of the stomach
  • malignant stomach neoplasm
  • malignant tumor of body of stomach
  • malignant tumor of greater curve of stomach
  • malignant tumor of lesser curve of stomach
  • malignant tumor of stomach
  • malignant tumor of the stomach
  • malignant tumour of body of stomach
  • malignant tumour of greater curve of stomach
  • malignant tumour of lesser curve of stomach
  • malignant tumour of stomach
  • malignant tumour of the stomach
  • stomach cancer
Mapped terms 10 mapped terms
  • DOID:10534
  • ICD10CM:C16
  • ICD9:151
  • ICD9:151.4
  • ICD9:151.5
  • ICD9:151.6
  • ICD9:151.9
  • NCIT:C9331
  • OMIM:613659
  • Orphanet:63443

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002299
(PRS3_gastric)
 PGP000328 |
Choi J et al. Int J Cancer (2020)
 Gastric cancer gastric cancer 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002299/ScoringFiles/PGS002299.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM013028 PGS002299
(PRS3_gastric)
 PSS009662|
European Ancestry|
272 individuals
 PGP000328 |
Choi J et al. Int J Cancer (2020)
 Reported Trait: Gastric cancer — AUROC: 0.56 [0.54, 0.58] — — —
PPM013036 PGS002299
(PRS3_gastric)
 PSS009662|
European Ancestry|
272 individuals
 PGP000328 |
Choi J et al. Int J Cancer (2020)
 Reported Trait: Gastric cancer — — Hazard ratio (HR top 5% vs average): 1.27 [0.75, 2.15] Age, birth cohort, genotyping array, top 10 PCs for ancestry and sex (for nonsex specific cancer only) —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009662 gastric cancer (ICD- 9 = 151 or ICD-10 = C16) — 272 individuals — European — UKB —