Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004124
(pt_clump_nested.CV.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 5,808
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004124/ScoringFiles/PGS004124.txt.gz
PGS004125
(pt_clump_nested.CV.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 765
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004125/ScoringFiles/PGS004125.txt.gz
PGS004126
(pt_clump_nested.CV.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 579
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004126/ScoringFiles/PGS004126.txt.gz
PGS004127
(pt_clump_nested.CV.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 246
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004127/ScoringFiles/PGS004127.txt.gz
PGS004128
(pt_clump_nested.CV.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 8,543
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004128/ScoringFiles/PGS004128.txt.gz
PGS004129
(pt_clump_nested.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 8,543
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004129/ScoringFiles/PGS004129.txt.gz
PGS004130
(pt_clump_nested.CV.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 7,279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004130/ScoringFiles/PGS004130.txt.gz
PGS004131
(pt_clump_nested.CV.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 7,279
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004131/ScoringFiles/PGS004131.txt.gz
PGS004132
(pt_clump_nested.CV.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 354
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004132/ScoringFiles/PGS004132.txt.gz
PGS004133
(pt_clump_nested.CV.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 155
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004133/ScoringFiles/PGS004133.txt.gz
PGS004134
(sbayesr.auto.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 782,021
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004134/ScoringFiles/PGS004134.txt.gz
PGS004135
(sbayesr.auto.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 912,746
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004135/ScoringFiles/PGS004135.txt.gz
PGS004136
(sbayesr.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 930,497
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004136/ScoringFiles/PGS004136.txt.gz
PGS004137
(sbayesr.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 950,524
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004137/ScoringFiles/PGS004137.txt.gz
PGS004138
(sbayesr.auto.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 888,649
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004138/ScoringFiles/PGS004138.txt.gz
PGS004139
(sbayesr.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 945,385
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004139/ScoringFiles/PGS004139.txt.gz
PGS004140
(sbayesr.auto.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 875,144
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004140/ScoringFiles/PGS004140.txt.gz
PGS004141
(sbayesr.auto.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 683,029
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004141/ScoringFiles/PGS004141.txt.gz
PGS004142
(sbayesr.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 804,867
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004142/ScoringFiles/PGS004142.txt.gz
PGS004143
(sbayesr.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 804,867
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004143/ScoringFiles/PGS004143.txt.gz
PGS004144
(sbayesr.auto.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 822,407
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004144/ScoringFiles/PGS004144.txt.gz
PGS004145
(sbayesr.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 822,407
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004145/ScoringFiles/PGS004145.txt.gz
PGS004146
(sbayesr.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 915,771
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004146/ScoringFiles/PGS004146.txt.gz
PGS004147
(sbayesr.auto.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 45,996
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004147/ScoringFiles/PGS004147.txt.gz
PGS004148
(sbayesr.auto.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 671,211
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004148/ScoringFiles/PGS004148.txt.gz
PGS004149
(sbayesr.auto.GCST90018959.Height)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Height body height 962,278
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004149/ScoringFiles/PGS004149.txt.gz
PGS004150
(UKBB_EnsPGS.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 1,039,042
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004150/ScoringFiles/PGS004150.txt.gz
PGS004151
(UKBB_EnsPGS.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 1,102,205
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004151/ScoringFiles/PGS004151.txt.gz
PGS004152
(UKBB_EnsPGS.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,071,786
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004152/ScoringFiles/PGS004152.txt.gz
PGS004153
(UKBB_EnsPGS.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,133,268
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004153/ScoringFiles/PGS004153.txt.gz
PGS004154
(UKBB_EnsPGS.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 1,116,976
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004154/ScoringFiles/PGS004154.txt.gz
PGS004155
(UKBB_EnsPGS.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,139,693
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004155/ScoringFiles/PGS004155.txt.gz
PGS004156
(UKBB_EnsPGS.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,138,452
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004156/ScoringFiles/PGS004156.txt.gz
PGS004157
(UKBB_EnsPGS.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 1,009,664
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004157/ScoringFiles/PGS004157.txt.gz
PGS004158
(UKBB_EnsPGS.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,135,455
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004158/ScoringFiles/PGS004158.txt.gz
PGS004159
(UKBB_EnsPGS.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,141,659
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004159/ScoringFiles/PGS004159.txt.gz
PGS004160
(UKBB_EnsPGS.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 976,174
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004160/ScoringFiles/PGS004160.txt.gz
PGS004161
(UKBB_EnsPGS.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 1,005,478
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004161/ScoringFiles/PGS004161.txt.gz
PGS004162
(UKBB_EnsPGS.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 62,645
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004162/ScoringFiles/PGS004162.txt.gz
PGS004163
(UKBB_EnsPGS.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 778,275
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004163/ScoringFiles/PGS004163.txt.gz
PGS004164
(PRS16_LC)
 PGP000518 |
Wei X et al. Int J Cancer (2023)
 Lung cancer in never smokers lung carcinoma,
smoking status measurement		 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004164/ScoringFiles/PGS004164.txt.gz
PGS004165
(PRS21_LC)
 PGP000518 |
Wei X et al. Int J Cancer (2023)
 Lung cancer lung carcinoma 21
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004165/ScoringFiles/PGS004165.txt.gz
PGS004166
(bc_1)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Breast cancer breast carcinoma 3,920
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004166/ScoringFiles/PGS004166.txt.gz
PGS004167
(bc_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Breast cancer breast carcinoma 717
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004167/ScoringFiles/PGS004167.txt.gz
PGS004168
(bc_3)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Breast cancer breast carcinoma 4,618
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004168/ScoringFiles/PGS004168.txt.gz
PGS004169
(bc_4)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Breast cancer breast carcinoma 1,361
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004169/ScoringFiles/PGS004169.txt.gz
PGS004170
(bc_5)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Breast cancer breast carcinoma 2,278
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004170/ScoringFiles/PGS004170.txt.gz
PGS004171
(t1d_1)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 520
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004171/ScoringFiles/PGS004171.txt.gz
PGS004172
(t1d_2)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 70
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004172/ScoringFiles/PGS004172.txt.gz
PGS004173
(t1d_3)
 PGP000520 |
Raben TG et al. Sci Rep (2023)
 Type 1 diabetes type 1 diabetes mellitus 295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004173/ScoringFiles/PGS004173.txt.gz
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