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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
Show European ancestry data
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only
Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS000790
(CC_Melanoma_IV)
PGP000186
|
Kachuri L
et al.
Nat Commun (2020)
Melanoma
melanoma
24
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000790/ScoringFiles/PGS000790.txt.gz
PGS001299
(GBE_cancer1041)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Cervical cancer
cervical carcinoma
24
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001299/ScoringFiles/PGS001299.txt.gz
PGS002729
(PRS_knee)
PGP000336
|
Sedaghati-Khayat B
et al.
Arthritis Rheumatol (2022)
Knee osteoarthritis
osteoarthritis, knee
24
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002729/ScoringFiles/PGS002729.txt.gz
PGS002736
(PRS24)
PGP000344
|
Bafligil C
et al.
Genet Med (2022)
Endometrial cancer
endometrial carcinoma
24
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002736/ScoringFiles/PGS002736.txt.gz
PGS003020
(ExPRSweb_Hypertension_finngen-R4-FG_PT_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Hypertension
hypertension
24
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003020/ScoringFiles/PGS003020.txt.gz
PGS003021
(ExPRSweb_Hypertension_finngen-R4-FG_PLINK_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Hypertension
hypertension
24
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003021/ScoringFiles/PGS003021.txt.gz
PGS003450
(PRS24_MM)
PGP000448
|
Berndt SI
et al.
Leukemia (2022)
Multiple myeloma
multiple myeloma
24
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003450/ScoringFiles/PGS003450.txt.gz
PGS005106
(PRSAFR_ER−)
PGP000694
|
Jia G
et al.
Nat Genet (2024)
ER-negative breast cancer
estrogen-receptor negative breast cancer
24
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005106/ScoringFiles/PGS005106.txt.gz
PGS000484
(PRSWEB_PHECODE174.1_D05_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Breast cancer (female)
breast carcinoma
25
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000484/ScoringFiles/PGS000484.txt.gz
PGS001281
(GBE_HC86)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Migraine
migraine disorder
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001281/ScoringFiles/PGS001281.txt.gz
PGS001773
(PRS_atopicDermatitis)
PGP000253
|
Simard M
et al.
J Allergy Clin Immunol (2020)
Moderate-to-severe atopic dermatitis
atopic eczema
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001773/ScoringFiles/PGS001773.txt.gz
PGS002827
(ExPRSweb_Alcohol_20403_PLINK_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Alcohol consumption
alcohol consumption quality
25
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002827/ScoringFiles/PGS002827.txt.gz
PGS003413
(rvPRS_IOP)
PGP000426
|
Gao XR
et al.
Nat Commun (2022)
Intraocular pressure
intraocular pressure measurement
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003413/ScoringFiles/PGS003413.txt.gz
PGS003487
(PRS_IL4)
PGP000451
|
Al-Janabi A
et al.
J Invest Dermatol (2023)
General atopic disease (IL-4 related variants)
allergic disease
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003487/ScoringFiles/PGS003487.txt.gz
PGS003652
(R_hippocampal_tail_trans_ancestry_meta_analysis)
PGP000464
|
Liu N
et al.
Nat Genet (2023)
Right hippocampal tail volume
hippocampal formation volume
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003652/ScoringFiles/PGS003652.txt.gz
PGS003796
(LDL_SAS_CT)
PGP000489
|
Zhang H
et al.
Nat Genet (2023)
LDL cholesterol
low density lipoprotein cholesterol measurement
25
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003796/ScoringFiles/PGS003796.txt.gz
PGS004249
(PRS25_ovary)
PGP000542
|
Kim ES
et al.
NPJ Precis Oncol (2023)
Ovarian cancer
ovarian carcinoma
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004249/ScoringFiles/PGS004249.txt.gz
PGS004890
(CC-GWAS_PRS)
PGP000620
|
Sun X
et al.
Cancer Res (2024)
Triple negative breast cancer versus luminal breast cancer
triple-negative breast cancer
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004890/ScoringFiles/PGS004890.txt.gz
PGS004891
(TNBC_PRS25)
PGP000620
|
Sun X
et al.
Cancer Res (2024)
Triple negative breast cancer
triple-negative breast cancer
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004891/ScoringFiles/PGS004891.txt.gz
PGS005169
(PRS25_LUAD)
PGP000713
|
Blechter B
et al.
JAMA Netw Open (2023)
Lung adenocarcinoma
lung adenocarcinoma
25
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005169/ScoringFiles/PGS005169.txt.gz
PGS000114
(GRS-JIA-20)
PGP000052
|
Cánovas R
et al.
Ann Rheum Dis (2020)
Juvenile Idiopathic Arthritis
juvenile idiopathic arthritis
26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000114/ScoringFiles/PGS000114.txt.gz
PGS000736
(PRS_QRS)
PGP000144
|
Tadros R
et al.
Eur Heart J (2019)
QRS duration
QRS duration
26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000736/ScoringFiles/PGS000736.txt.gz
PGS000945
(GBE_HC710)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Dementia in Alzheimer's disease (time-to-event)
dementia
,
Alzheimer disease
26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000945/ScoringFiles/PGS000945.txt.gz
PGS001371
(GBE_INI2976)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Age diabetes diagnosed
diabetes mellitus
,
age at diagnosis
26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001371/ScoringFiles/PGS001371.txt.gz
PGS001413
(GBE_INI22423)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
LV stroke volume
left ventricular stroke volume measurement
26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001413/ScoringFiles/PGS001413.txt.gz
PGS003737
(PRS26_BrC)
PGP000470
|
Xin J
et al.
EBioMedicine (2023)
Brain cancer
brain neoplasm
26
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003737/ScoringFiles/PGS003737.txt.gz
PGS004954
(PRS26_TC)
PGP000676
|
Pozdeyev N
et al.
J Clin Endocrinol Metab (2024)
Thyroid cancer
thyroid carcinoma
26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004954/ScoringFiles/PGS004954.txt.gz
PGS000010
(GRS27)
PGP000003
|
Mega JL
et al.
Lancet (2015)
Coronary heart disease
coronary artery disease
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000010/ScoringFiles/PGS000010.txt.gz
PGS000146
(CRC_GRS_27)
PGP000069
|
Hsu L
et al.
Gastroenterology (2015)
Colorectal cancer
colorectal cancer
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000146/ScoringFiles/PGS000146.txt.gz
PGS000372
(PRSWEB_PHECODE153_GWAS-Catalog-r2019-05-03-X153_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Colorectal cancer
colorectal cancer
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000372/ScoringFiles/PGS000372.txt.gz
PGS000424
(PRSWEB_PHECODE172.1_GWAS-Catalog-r2019-05-03-X172.1_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history)
melanoma
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000424/ScoringFiles/PGS000424.txt.gz
PGS000454
(PRSWEB_PHECODE172.21_BCC-Chahal_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000454/ScoringFiles/PGS000454.txt.gz
PGS000649
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Chronic lymphocytic leukemia
chronic lymphocytic leukemia
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000649/ScoringFiles/PGS000649.txt.gz
PGS000652
(PRSWEB_PHECODE204.4_C90_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Multiple myeloma
multiple myeloma
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000652/ScoringFiles/PGS000652.txt.gz
PGS000739
(HCM_GRS)
PGP000146
|
Harper AR
et al.
Nat Genet (2021)
Hypertrophic cardiomyopathy
hypertrophic cardiomyopathy
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000739/ScoringFiles/PGS000739.txt.gz
PGS000854
(T2D_BetaCell)
PGP000211
|
Aly DM
et al.
Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with beta cell function)
type 2 diabetes mellitus
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000854/ScoringFiles/PGS000854.txt.gz
PGS002233
(PRS27_NMR)
PGP000266
|
Chen LS
et al.
Pharmacogenomics (2018)
Nicotine metabolite ratio
nicotine metabolite ratio
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002233/ScoringFiles/PGS002233.txt.gz
PGS003334
(PRS_dementia)
PGP000402
|
Chen Y
et al.
Arch Gerontol Geriatr (2022)
Dementia
dementia
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003334/ScoringFiles/PGS003334.txt.gz
PGS004321
(PRS27_CAD)
PGP000554
|
Marston NA
et al.
Circulation (2019)
Coronary heart disease
coronary artery disease
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004321/ScoringFiles/PGS004321.txt.gz
PGS000200
(GRS28)
PGP000082
|
Tikkanen E
et al.
Arterioscler Thromb Vasc Biol (2013)
Coronary heart disease
coronary artery disease
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000200/ScoringFiles/PGS000200.txt.gz
PGS000340
(LDL-Cpsp)
PGP000107
|
Trinder M
et al.
Circ Genom Precis Med (2020)
LDL cholesterol
low density lipoprotein cholesterol measurement
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000340/ScoringFiles/PGS000340.txt.gz
PGS000452
(PRSWEB_PHECODE172.21_BCC-Chahal_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000452/ScoringFiles/PGS000452.txt.gz
PGS000453
(PRSWEB_PHECODE172.21_BCC-Chahal_P_5e-08_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000453/ScoringFiles/PGS000453.txt.gz
PGS000455
(PRSWEB_PHECODE172.21_BCC-Chahal_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000455/ScoringFiles/PGS000455.txt.gz
PGS000666
(PGS_LVESVi)
PGP000126
|
Pirruccello JP
et al.
Nat Commun (2020)
Body surface area-indexed left ventricular end-systolic volume
left ventricular systolic function measurement
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000666/ScoringFiles/PGS000666.txt.gz
PGS002302
(PRS28_glioma)
PGP000328
|
Choi J
et al.
Int J Cancer (2020)
Glioma
glioma
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002302/ScoringFiles/PGS002302.txt.gz
PGS003403
(PRS28_LDL)
PGP000420
|
Trinder M
et al.
J Am Coll Cardiol (2019)
LDL cholesterol
low density lipoprotein cholesterol measurement
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003403/ScoringFiles/PGS003403.txt.gz
PGS003412
(PRS28_melanoma)
PGP000424
|
Olsen CM
et al.
Br J Dermatol (2019)
Melanoma
melanoma
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003412/ScoringFiles/PGS003412.txt.gz
PGS003441
(GRS28_AD)
PGP000444
|
Petrican R
et al.
Sci Rep (2023)
Alzheimer's disease
Alzheimer disease
28
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003441/ScoringFiles/PGS003441.txt.gz
PGS003741
(PRS28_OC)
PGP000470
|
Xin J
et al.
EBioMedicine (2023)
Ovarian cancer
ovarian carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003741/ScoringFiles/PGS003741.txt.gz
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