Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003162
(ExPRSweb_VitB12_100013-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 10,318,272
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003162/ScoringFiles/PGS003162.txt.gz
PGS003157
(ExPRSweb_VitB12_100013-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin B12 vitamin B12 measurement 10,318,270
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003157/ScoringFiles/PGS003157.txt.gz
PGS003177
(ExPRSweb_VitD_100021-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D amount 10,318,270
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003177/ScoringFiles/PGS003177.txt.gz
PGS003182
(ExPRSweb_VitD_100021-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D amount 10,318,270
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003182/ScoringFiles/PGS003182.txt.gz
PGS003192
(ExPRSweb_VitD_30890-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D amount 10,313,259
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003192/ScoringFiles/PGS003192.txt.gz
PGS003197
(ExPRSweb_VitD_30890-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Vitamin D vitamin D amount 10,313,258
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003197/ScoringFiles/PGS003197.txt.gz
PGS002867
(ExPRSweb_CRP_30710-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 10,306,310
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002867/ScoringFiles/PGS002867.txt.gz
PGS002872
(ExPRSweb_CRP_30710-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 10,306,271
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002872/ScoringFiles/PGS002872.txt.gz
PGS003092
(ExPRSweb_T2D_2443_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 10,304,000
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003092/ScoringFiles/PGS003092.txt.gz
PGS002972
(ExPRSweb_Height_50-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Height body height 10,297,262
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002972/ScoringFiles/PGS002972.txt.gz
PGS002967
(ExPRSweb_Height_50-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Height body height 10,297,259
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002967/ScoringFiles/PGS002967.txt.gz
PGS002922
(ExPRSweb_Estradiol_30800-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estradiol estradiol measurement 10,287,670
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002922/ScoringFiles/PGS002922.txt.gz
PGS002917
(ExPRSweb_Estradiol_30800-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estradiol estradiol measurement 10,287,664
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002917/ScoringFiles/PGS002917.txt.gz
PGS005197
(VPGS_WBC)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 White blood cell count variance leukocyte quantity 9,503,677
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005197/ScoringFiles/PGS005197.txt.gz
PGS005184
(VPGS_LYMPH_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Lymphocyte percentage of white cells variance lymphocyte percentage of leukocytes 9,502,358
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005184/ScoringFiles/PGS005184.txt.gz
PGS005177
(VPGS_HCT)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Hematocrit variance hematocrit 9,502,208
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005177/ScoringFiles/PGS005177.txt.gz
PGS005185
(VPGS_MCHC)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Mean corpuscular hemoglobin concentration variance mean corpuscular hemoglobin concentration 9,502,181
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005185/ScoringFiles/PGS005185.txt.gz
PGS005174
(VPGS_LYMPH)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Lymphocyte count variance lymphocyte count 9,501,646
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005174/ScoringFiles/PGS005174.txt.gz
PGS005195
(VPGS_RBC)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Red blood cell count variance erythrocyte count 9,501,618
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005195/ScoringFiles/PGS005195.txt.gz
PGS005178
(VPGS_HGB)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Hemoglobin concentration variance hemoglobin measurement 9,500,975
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005178/ScoringFiles/PGS005178.txt.gz
PGS005187
(VPGS_MCV)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Mean corpuscular volume variance erythrocyte volume 9,500,832
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005187/ScoringFiles/PGS005187.txt.gz
PGS005192
(VPGS_NEUT_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Neutrophil percentage of white cells variance neutrophil percentage of leukocytes 9,499,990
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005192/ScoringFiles/PGS005192.txt.gz
PGS005191
(VPGS_NEUT)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Neutrophil count variance neutrophil count 9,499,020
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005191/ScoringFiles/PGS005191.txt.gz
PGS005186
(VPGS_MCH)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Mean corpuscular hemoglobin variance mean corpuscular hemoglobin 9,498,745
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005186/ScoringFiles/PGS005186.txt.gz
PGS005183
(VPGS_EO_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Eosinophil percentage of white cells variance eosinophil percentage of leukocytes 9,498,015
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005183/ScoringFiles/PGS005183.txt.gz
PGS005181
(VPGS_BASO_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Basophil percentage of white cells variance basophil percentage of leukocytes 9,493,222
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005181/ScoringFiles/PGS005181.txt.gz
PGS005189
(VPGS_MONO)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Monocyte count variance monocyte count 9,489,073
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005189/ScoringFiles/PGS005189.txt.gz
PGS005190
(VPGS_MONO_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Monocyte percentage of white cells variance monocyte percentage of leukocytes 9,488,343
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005190/ScoringFiles/PGS005190.txt.gz
PGS005179
(VPGS_HLR)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 High light scatter reticulocyte count variance reticulocyte count 9,481,520
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005179/ScoringFiles/PGS005179.txt.gz
PGS005180
(VPGS_HLR_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 High light scatter reticulocyte percentage of red cells variance reticulocyte amount 9,481,225
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005180/ScoringFiles/PGS005180.txt.gz
PGS005196
(VPGS_RET_P)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Reticulocyte fraction of red cells variance reticulocyte amount 9,470,586
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005196/ScoringFiles/PGS005196.txt.gz
PGS005176
(VPGS_RET)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Reticulocyte count variance reticulocyte count 9,469,884
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005176/ScoringFiles/PGS005176.txt.gz
PGS005172
(VPGS_IRF)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Immature fraction of reticulocytes variance reticulocyte amount 9,469,602
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005172/ScoringFiles/PGS005172.txt.gz
PGS005194
(VPGS_PDW)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Platelet distribution width variance platelet component distribution width 9,454,587
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005194/ScoringFiles/PGS005194.txt.gz
PGS005188
(VPGS_MPV)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Mean platelet volume variance platelet volume 9,454,052
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005188/ScoringFiles/PGS005188.txt.gz
PGS005173
(VPGS_PCT)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Plateletcrit variance platelet crit 9,451,377
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005173/ScoringFiles/PGS005173.txt.gz
PGS005193
(VPGS_PLT)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Platelet count variance platelet count 9,451,248
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005193/ScoringFiles/PGS005193.txt.gz
PGS005175
(VPGS_BASO)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Basophil count variance basophil count 9,437,557
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005175/ScoringFiles/PGS005175.txt.gz
PGS003147
(ExPRSweb_TG_30870-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 8,924,773
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003147/ScoringFiles/PGS003147.txt.gz
PGS003152
(ExPRSweb_TG_30870-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 8,924,752
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003152/ScoringFiles/PGS003152.txt.gz
PGS003037
(ExPRSweb_LDL_30780-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 8,918,470
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003037/ScoringFiles/PGS003037.txt.gz
PGS005182
(VPGS_EO)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 Eosinophil count variance eosinophil count 8,862,968
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005182/ScoringFiles/PGS005182.txt.gz
PGS002912
(ExPRSweb_Drinking_20117-2_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Drinking status alcohol drinking 8,598,752
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002912/ScoringFiles/PGS002912.txt.gz
PGS003322
(ExPRSweb_Insomnia_1160_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Insomnia insomnia 8,590,163
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003322/ScoringFiles/PGS003322.txt.gz
PGS002997
(ExPRSweb_Hypertension_20002-1065_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertension 7,601,215
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002997/ScoringFiles/PGS002997.txt.gz
PGS003002
(ExPRSweb_Hypertension_20002-1072_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Hypertension hypertension 7,601,215
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003002/ScoringFiles/PGS003002.txt.gz
PGS003212
(ExPRSweb_SleepApnea_G6-SLEEPAPNO_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Sleep apnea sleep apnea 7,601,206
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003212/ScoringFiles/PGS003212.txt.gz
PGS002937
(ExPRSweb_Glucose_30740-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Glucose glucose measurement 7,600,988
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002937/ScoringFiles/PGS002937.txt.gz
PGS002942
(ExPRSweb_Glucose_30740-raw_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Glucose glucose measurement 7,600,988
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002942/ScoringFiles/PGS002942.txt.gz
PGS003072
(ExPRSweb_SBP_4080-irnt_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Systolic blood pressure systolic blood pressure 7,477,086
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003072/ScoringFiles/PGS003072.txt.gz
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