Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000882
(25OHD_SBayesR_PGS)
 PGP000228 |
Revez JA et al. Nat Commun (2020)
 25-hydroxyvitamin D vitamin D measurement 1,094,650
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000882/ScoringFiles/PGS000882.txt.gz
PGS001358
(GBE_INI5116)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 3mm cylindrical power (R) eye measurement 148
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001358/ScoringFiles/PGS001358.txt.gz
PGS001361
(GBE_INI5104)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 3mm strong meridian angle (L) eye measurement 976
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001361/ScoringFiles/PGS001361.txt.gz
PGS001359
(GBE_INI5135)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 3mm strong meridian (L) eye measurement 9,497
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001359/ScoringFiles/PGS001359.txt.gz
PGS001360
(GBE_INI5132)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 3mm strong meridian (R) eye measurement 10,082
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001360/ScoringFiles/PGS001360.txt.gz
PGS001362
(GBE_INI5096)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 3mm weak meridian (L) eye measurement 8,600
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001362/ScoringFiles/PGS001362.txt.gz
PGS001363
(GBE_INI5099)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 3mm weak meridian (R) eye measurement 8,983
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001363/ScoringFiles/PGS001363.txt.gz
PGS001364
(GBE_INI5113)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 6mm cylindrical power angle (L) eye measurement 319
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001364/ScoringFiles/PGS001364.txt.gz
PGS001365
(GBE_INI5134)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 6mm strong meridian (L) eye measurement 8,504
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001365/ScoringFiles/PGS001365.txt.gz
PGS001366
(GBE_INI5133)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 6mm strong meridian (R) eye measurement 9,219
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001366/ScoringFiles/PGS001366.txt.gz
PGS001367
(GBE_INI5097)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 6mm weak meridian (L) eye measurement 8,580
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001367/ScoringFiles/PGS001367.txt.gz
PGS001368
(GBE_INI5098)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 6mm weak meridian (R) eye measurement 8,730
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001368/ScoringFiles/PGS001368.txt.gz
PGS002811
(ASATadjbmi3_weights_select)
 PGP000391 |
Agrawal S et al. Nat Commun (2022)
 Abdominal adipose tissue volumes adjusted for BMI and height adipose tissue measurement 1,125,301
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002811/ScoringFiles/PGS002811.txt.gz
PGS000753
(PRS29_AAA)
 PGP000159 |
Klarin D et al. Circulation (2020)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 29
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000753/ScoringFiles/PGS000753.txt.gz
PGS001784
(1kgeur_gbmi_leaveUKBBout_AAA_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 911,440
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001784/ScoringFiles/PGS001784.txt.gz
PGS002054
(portability-ldpred2_442.11)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 592,187
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002054/ScoringFiles/PGS002054.txt.gz
PGS003429
(AAA)
 PGP000436 |
Kelemen M K et al. medRxiv (2023)
|Pre		 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 831,447
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003429/ScoringFiles/PGS003429.txt.gz
PGS003972
(PRSAAA)
 PGP000513 |
Roychowdhury T et al. Nat Genet (2023)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 1,118,997
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003972/ScoringFiles/PGS003972.txt.gz
PGS003973
(PRSAAA_woUKB)
 PGP000513 |
Roychowdhury T et al. Nat Genet (2023)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 1,118,997
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003973/ScoringFiles/PGS003973.txt.gz
PGS001884
(portability-PLR_785)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal pain Abdominal pain 2,796
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001884/ScoringFiles/PGS001884.txt.gz
PGS002096
(portability-ldpred2_785)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal pain Abdominal pain 791,954
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002096/ScoringFiles/PGS002096.txt.gz
PGS000914
(PRS6_EC)
 PGP000241 |
Wang M et al. Sci Rep (2021)
 Abnormal electrocardiogram Abnormal EKG 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000914/ScoringFiles/PGS000914.txt.gz
PGS001785
(1kgeur_gbmi_leaveUKBBout_AcApp_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Acute appendicitis appendicitis 911,334
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001785/ScoringFiles/PGS001785.txt.gz
PGS001369
(GBE_HC1090)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Acute appendicitis (time-to-event) appendicitis 4
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001369/ScoringFiles/PGS001369.txt.gz
PGS003448
(PRS15_ALL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Acute lymphoblastic leukemia acute lymphoblastic leukemia 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003448/ScoringFiles/PGS003448.txt.gz
PGS001314
(GBE_HC938)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Acute myocardial infarction (time-to-event) myocardial infarction 1,108
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001314/ScoringFiles/PGS001314.txt.gz
PGS003849
(PRSaddiction-rf)
 PGP000490 |
Hatoum AS et al. Nat Ment Health (2023)
 Addiction risk factors substance-related disorder 584,753
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003849/ScoringFiles/PGS003849.txt.gz
PGS000217
(ADM)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Adrenomedullin (ADM) serum levels blood protein measurement 552,254
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000217/ScoringFiles/PGS000217.txt.gz
PGS000034
(GRS_BMI)
 PGP000021 |
Song M et al. Diabetes (2017)
 Adult body mass index (BMI) body mass index 97
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000034/ScoringFiles/PGS000034.txt.gz
PGS000717
(PGS557_albs)
 PGP000132 |
Richardson TG et al. BMJ (2020)
 Adult life body size body mass index 557
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000717/ScoringFiles/PGS000717.txt.gz
PGS000758
(LASSO_Height)
 PGP000163 |
Lu T et al. J Clin Endocrinol Metab (2021)
 Adult standing height body height 33,938
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000758/ScoringFiles/PGS000758.txt.gz - Check Terms/Licenses
PGS001370
(GBE_INI3786)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age asthma diagnosed asthma 922
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001370/ScoringFiles/PGS001370.txt.gz
PGS001912
(portability-PLR_F_age_first_birth)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age at first live birth age at first birth measurement 15,201
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001912/ScoringFiles/PGS001912.txt.gz
PGS002127
(portability-ldpred2_F_age_first_birth)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age at first live birth age at first birth measurement 848,784
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002127/ScoringFiles/PGS002127.txt.gz
PGS003505
(cont-decay-F_age_first_birth)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Age at first live birth age at first birth measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003505/ScoringFiles/PGS003505.txt.gz
PGS001007
(GBE_INI2139)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age at first sexual intercourse age at first sexual intercourse measurement 9,997
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001007/ScoringFiles/PGS001007.txt.gz
PGS002310
(repro_MENARCHE_AGE.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002310/ScoringFiles/PGS002310.txt.gz
PGS002382
(repro_MENARCHE_AGE.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 6,332
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002382/ScoringFiles/PGS002382.txt.gz
PGS002431
(repro_MENARCHE_AGE.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 21,880
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002431/ScoringFiles/PGS002431.txt.gz
PGS002480
(repro_MENARCHE_AGE.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 115,583
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002480/ScoringFiles/PGS002480.txt.gz
PGS002529
(repro_MENARCHE_AGE.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 1,546
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002529/ScoringFiles/PGS002529.txt.gz
PGS002578
(repro_MENARCHE_AGE.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 891
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002578/ScoringFiles/PGS002578.txt.gz
PGS002627
(repro_MENARCHE_AGE.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 831,098
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002627/ScoringFiles/PGS002627.txt.gz
PGS002676
(repro_MENARCHE_AGE.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Age at menarche age at menarche 988,120
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002676/ScoringFiles/PGS002676.txt.gz
PGS002815
(ExPRSweb_AgeAtMenarche_ieu-a-1095_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menarche age at menarche 137,734
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002815/ScoringFiles/PGS002815.txt.gz
PGS002816
(ExPRSweb_AgeAtMenarche_ieu-a-1095_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menarche age at menarche 13,852
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002816/ScoringFiles/PGS002816.txt.gz
PGS002817
(ExPRSweb_AgeAtMenarche_ieu-a-1095_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menarche age at menarche 13,852
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002817/ScoringFiles/PGS002817.txt.gz
PGS002818
(ExPRSweb_AgeAtMenarche_ieu-a-1095_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menarche age at menarche 991,712
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002818/ScoringFiles/PGS002818.txt.gz
PGS002819
(ExPRSweb_AgeAtMenarche_ieu-a-1095_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menarche age at menarche 895,562
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002819/ScoringFiles/PGS002819.txt.gz
PGS002820
(ExPRSweb_AgeAtMenopause_ieu-a-1004_LASSOSUM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menopause age at menopause 99,745
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002820/ScoringFiles/PGS002820.txt.gz
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