Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS002292
(PRS36_KC)
PGP000321 |
He W et al. JAMA Ophthalmol (2022)
Keratoconus keratoconus 36
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002292/ScoringFiles/PGS002292.txt.gz
PGS003394
(PRS_Stepwise)
PGP000277 |
Dareng EO et al. Eur J Hum Genet (2022)
Epithelial ovarian cancer ovarian carcinoma 36
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003394/ScoringFiles/PGS003394.txt.gz
PGS000022
(T1D_GRS)
PGP000012 |
Perry DJ et al. Sci Rep (2018)
Type 1 diabetes (T1D) type 1 diabetes mellitus 37
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000022/ScoringFiles/PGS000022.txt.gz
PGS000061
(GRS_LDL)
PGP000045 |
Johnson L et al. PLoS One (2015)
Low-density lipoprotein (LDL) cholesterol low density lipoprotein cholesterol measurement 37
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000061/ScoringFiles/PGS000061.txt.gz
PGS000851
(T2D_Insulin_Action_Secretion)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with insulin action/secretion) type 2 diabetes mellitus 37
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000851/ScoringFiles/PGS000851.txt.gz
PGS002750
(PRS37_THR)
PGP000362 |
Lacaze P et al. Arthritis Rheumatol (2022)
Total hip replacement total hip arthroplasty,
osteoarthritis, hip
37
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002750/ScoringFiles/PGS002750.txt.gz
PGS001036
(GBE_INI23004)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Epstein Barr virus nuclear antigen 1 IgG seropositivity Epstein Barr virus nuclear antigen-1 seropositivity 38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001036/ScoringFiles/PGS001036.txt.gz
PGS001828
(portability-PLR_290.11)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Alzheimer's disease Alzheimer disease 38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001828/ScoringFiles/PGS001828.txt.gz
PGS001835
(portability-PLR_364.5)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Corneal dystrophy corneal dystrophy 38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001835/ScoringFiles/PGS001835.txt.gz
PGS002950
(ExPRSweb_Glucose_MAGIC-FastingGlucose_PT_UKB_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Glucose fasting blood glucose measurement 38
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002950/ScoringFiles/PGS002950.txt.gz
PGS002951
(ExPRSweb_Glucose_MAGIC-FastingGlucose_PLINK_UKB_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Glucose fasting blood glucose measurement 38
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002951/ScoringFiles/PGS002951.txt.gz
PGS004903
(PRS_ALL)
PGP000633 |
Al-Janabi A et al. J Allergy Clin Immunol (2023)
Atopic dermatitis atopic eczema 38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004903/ScoringFiles/PGS004903.txt.gz
PGS000811
(AD-PRS_39)
PGP000196 |
Najar J et al. Alzheimers Dement (Amst) (2021)
Alzheimer's disease Alzheimer disease 39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000811/ScoringFiles/PGS000811.txt.gz
PGS000842
(WHR)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Waist-hip ratio waist-hip ratio 39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000842/ScoringFiles/PGS000842.txt.gz
PGS001072
(GBE_BIN_FC20001757)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Facial aging, looking 'older than you are' skin aging measurement 39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001072/ScoringFiles/PGS001072.txt.gz
PGS001775
(PRS39_AD)
PGP000255 |
Ebenau JL et al. Alzheimers Dement (Amst) (2021)
Alzheimer's disease Alzheimer disease 39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001775/ScoringFiles/PGS001775.txt.gz
PGS003969
(PRS39_HF)
PGP000511 |
Rasooly D et al. Nat Commun (2023)
Heart failure heart failure 39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003969/ScoringFiles/PGS003969.txt.gz
PGS004588
(PRS39_Eur)
PGP000567 |
Jung SH et al. JAMA Netw Open (2022)
Alzheimer's disease Alzheimer disease 39
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004588/ScoringFiles/PGS004588.txt.gz
PGS000601
(PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of testis testicular carcinoma 40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000601/ScoringFiles/PGS000601.txt.gz
PGS000602
(PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of testis testicular carcinoma 40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000602/ScoringFiles/PGS000602.txt.gz
PGS000801
(GRS40_CRC)
PGP000190 |
Hang D et al. Int J Epidemiol (2020)
Colorectal cancer colorectal cancer 40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000801/ScoringFiles/PGS000801.txt.gz
PGS000898
(PRS39_AD)
PGP000231 |
de Rojas I et al. Nat Commun (2021)
Alzheimer's disease Alzheimer disease 40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000898/ScoringFiles/PGS000898.txt.gz
PGS003813
(logTG_SAS_CT)
PGP000489 |
Zhang H et al. Nat Genet (2023)
Log triglycerides triglyceride measurement 40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003813/ScoringFiles/PGS003813.txt.gz
PGS003854
(PRS40_TG)
PGP000493 |
Li J et al. JAMA Netw Open (2023)
Triglycerides triglyceride measurement 40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003854/ScoringFiles/PGS003854.txt.gz
PGS004274
(GenoBoost_inflammatory_bowel_disease_4)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Inflammatory bowel disease inflammatory bowel disease 40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004274/ScoringFiles/PGS004274.txt.gz
PGS004282
(GenoBoost_all-cause_dementia_2)
PGP000546 |
Ohta R et al. Nat Commun (2024)
All-cause dementia dementia 40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004282/ScoringFiles/PGS004282.txt.gz
PGS004289
(GenoBoost_alzheimer_s_disease_4)
PGP000546 |
Ohta R et al. Nat Commun (2024)
Alzheimer's disease Alzheimer disease 40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004289/ScoringFiles/PGS004289.txt.gz
PGS000149
(CRC41)
PGP000072 |
Smith T et al. Br J Cancer (2018)
Colorectal cancer colorectal cancer 41
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000149/ScoringFiles/PGS000149.txt.gz
PGS000374
(PRSWEB_PHECODE153_UKBB-SAIGE-HRC-X153_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Colorectal cancer colorectal cancer 41
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000374/ScoringFiles/PGS000374.txt.gz
PGS000513
(PRSWEB_PHECODE174.1_UKBB-SAIGE-HRC-X174.1_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Breast cancer (female) breast carcinoma 41
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000513/ScoringFiles/PGS000513.txt.gz
PGS000803
(wGRS41_SLE)
PGP000192 |
Kawai VK et al. Lupus (2021)
Systemic lupus erythematosus systemic lupus erythematosus 41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000803/ScoringFiles/PGS000803.txt.gz
PGS000874
(PRS41_CLL)
PGP000220 |
Kleinstern G et al. Blood (2018)
Chronic lymphocytic leukemia chronic lymphocytic leukemia 41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000874/ScoringFiles/PGS000874.txt.gz
PGS001270
(GBE_HC151)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Multiple sclerosis multiple sclerosis 41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001270/ScoringFiles/PGS001270.txt.gz
PGS004892
(TNBC_PRS41)
PGP000620 |
Sun X et al. Cancer Res (2024)
Triple negative breast cancer triple-negative breast cancer 41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004892/ScoringFiles/PGS004892.txt.gz
PGS000482
(PRSWEB_PHECODE174.1_C50_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Breast cancer (female) breast carcinoma 42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000482/ScoringFiles/PGS000482.txt.gz
PGS000589
(PRSWEB_PHECODE185_UKBB-SAIGE-HRC-X185_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Prostate cancer prostate carcinoma 42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000589/ScoringFiles/PGS000589.txt.gz
PGS000760
(VIT)
PGP000164 |
Khan Z et al. Nat Commun (2021)
Vitiligo Vitiligo 42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000760/ScoringFiles/PGS000760.txt.gz
PGS001326
(GBE_HC431)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Emphysema emphysema 42
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001326/ScoringFiles/PGS001326.txt.gz
PGS003295
(ExPRSweb_CysC_eGFRcys-overall-EA_PT_MGI_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate
42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003295/ScoringFiles/PGS003295.txt.gz
PGS003397
(PRS-42ASN)
PGP000415 |
Jee YH et al. Int J Epidemiol (2022)
Breast cancer breast carcinoma 42
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003397/ScoringFiles/PGS003397.txt.gz
PGS000304
(GRS43_HbA1c)
PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
HbA1c HbA1c measurement 43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000304/ScoringFiles/PGS000304.txt.gz
PGS000667
(LPA_GRS43)
PGP000127 |
Trinder M et al. JAMA Cardiol (2020)
Lipoprotein A lipoprotein A measurement 43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000667/ScoringFiles/PGS000667.txt.gz
PGS000750
(PRS_43)
PGP000155 |
Bobbili DR et al. J Med Genet (2020)
Parkinson's disease Parkinson disease 43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000750/ScoringFiles/PGS000750.txt.gz
PGS002305
(PRS43_CLL)
PGP000328 |
Choi J et al. Int J Cancer (2020)
Chronic lymphoid leukemia lymphoid leukemia 43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002305/ScoringFiles/PGS002305.txt.gz
PGS003453
(PRS43_CLL)
PGP000448 |
Berndt SI et al. Leukemia (2022)
Chronic lymphocytic leukemia chronic lymphocytic leukemia 43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003453/ScoringFiles/PGS003453.txt.gz
PGS004246
(PRS43_lung)
PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
Lung cancer lung carcinoma 43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004246/ScoringFiles/PGS004246.txt.gz
PGS000050
(PRS44)
PGP000035 |
Wen W et al. Breast Cancer Res (2016)
Breast cancer breast carcinoma 44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000050/ScoringFiles/PGS000050.txt.gz
PGS000604
(PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_PT_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of testis testicular carcinoma 44
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000604/ScoringFiles/PGS000604.txt.gz
PGS000648
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Chronic lymphocytic leukemia chronic lymphocytic leukemia 44
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000648/ScoringFiles/PGS000648.txt.gz
PGS000718
(PRPBB_44)
PGP000134 |
Lanfear DE et al. Circ Heart Fail (2020)
Beta-blocker survival benefit response to beta blocker 44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000718/ScoringFiles/PGS000718.txt.gz