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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
Show European ancestry data
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS002292
(PRS36_KC)
PGP000321
|
He W
et al.
JAMA Ophthalmol (2022)
Keratoconus
keratoconus
36
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002292/ScoringFiles/PGS002292.txt.gz
PGS003394
(PRS_Stepwise)
PGP000277
|
Dareng EO
et al.
Eur J Hum Genet (2022)
Epithelial ovarian cancer
ovarian carcinoma
36
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003394/ScoringFiles/PGS003394.txt.gz
PGS000022
(T1D_GRS)
PGP000012
|
Perry DJ
et al.
Sci Rep (2018)
Type 1 diabetes (T1D)
type 1 diabetes mellitus
37
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000022/ScoringFiles/PGS000022.txt.gz
PGS000061
(GRS_LDL)
PGP000045
|
Johnson L
et al.
PLoS One (2015)
Low-density lipoprotein (LDL) cholesterol
low density lipoprotein cholesterol measurement
37
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000061/ScoringFiles/PGS000061.txt.gz
PGS000851
(T2D_Insulin_Action_Secretion)
PGP000211
|
Aly DM
et al.
Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with insulin action/secretion)
type 2 diabetes mellitus
37
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000851/ScoringFiles/PGS000851.txt.gz
PGS002750
(PRS37_THR)
PGP000362
|
Lacaze P
et al.
Arthritis Rheumatol (2022)
Total hip replacement
total hip arthroplasty
,
osteoarthritis, hip
37
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002750/ScoringFiles/PGS002750.txt.gz
PGS001036
(GBE_INI23004)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Epstein Barr virus nuclear antigen 1 IgG seropositivity
Epstein Barr virus nuclear antigen-1 seropositivity
38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001036/ScoringFiles/PGS001036.txt.gz
PGS001828
(portability-PLR_290.11)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Alzheimer's disease
Alzheimer disease
38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001828/ScoringFiles/PGS001828.txt.gz
PGS001835
(portability-PLR_364.5)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Corneal dystrophy
corneal dystrophy
38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001835/ScoringFiles/PGS001835.txt.gz
PGS002950
(ExPRSweb_Glucose_MAGIC-FastingGlucose_PT_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Glucose
fasting blood glucose measurement
38
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002950/ScoringFiles/PGS002950.txt.gz
PGS002951
(ExPRSweb_Glucose_MAGIC-FastingGlucose_PLINK_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Glucose
fasting blood glucose measurement
38
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002951/ScoringFiles/PGS002951.txt.gz
PGS004903
(PRS_ALL)
PGP000633
|
Al-Janabi A
et al.
J Allergy Clin Immunol (2023)
Atopic dermatitis
atopic eczema
38
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004903/ScoringFiles/PGS004903.txt.gz
PGS000811
(AD-PRS_39)
PGP000196
|
Najar J
et al.
Alzheimers Dement (Amst) (2021)
Alzheimer's disease
Alzheimer disease
39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000811/ScoringFiles/PGS000811.txt.gz
PGS000842
(WHR)
PGP000211
|
Aly DM
et al.
Nat Genet (2021)
Waist-hip ratio
waist-hip ratio
39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000842/ScoringFiles/PGS000842.txt.gz
PGS001072
(GBE_BIN_FC20001757)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Facial aging, looking 'older than you are'
skin aging measurement
39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001072/ScoringFiles/PGS001072.txt.gz
PGS001775
(PRS39_AD)
PGP000255
|
Ebenau JL
et al.
Alzheimers Dement (Amst) (2021)
Alzheimer's disease
Alzheimer disease
39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001775/ScoringFiles/PGS001775.txt.gz
PGS003969
(PRS39_HF)
PGP000511
|
Rasooly D
et al.
Nat Commun (2023)
Heart failure
heart failure
39
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003969/ScoringFiles/PGS003969.txt.gz
PGS004588
(PRS39_Eur)
PGP000567
|
Jung SH
et al.
JAMA Netw Open (2022)
Alzheimer's disease
Alzheimer disease
39
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004588/ScoringFiles/PGS004588.txt.gz
PGS000601
(PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Malignant neoplasm of testis
testicular carcinoma
40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000601/ScoringFiles/PGS000601.txt.gz
PGS000602
(PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Malignant neoplasm of testis
testicular carcinoma
40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000602/ScoringFiles/PGS000602.txt.gz
PGS000801
(GRS40_CRC)
PGP000190
|
Hang D
et al.
Int J Epidemiol (2020)
Colorectal cancer
colorectal cancer
40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000801/ScoringFiles/PGS000801.txt.gz
PGS000898
(PRS39_AD)
PGP000231
|
de Rojas I
et al.
Nat Commun (2021)
Alzheimer's disease
Alzheimer disease
40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000898/ScoringFiles/PGS000898.txt.gz
PGS003813
(logTG_SAS_CT)
PGP000489
|
Zhang H
et al.
Nat Genet (2023)
Log triglycerides
triglyceride measurement
40
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003813/ScoringFiles/PGS003813.txt.gz
PGS003854
(PRS40_TG)
PGP000493
|
Li J
et al.
JAMA Netw Open (2023)
Triglycerides
triglyceride measurement
40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003854/ScoringFiles/PGS003854.txt.gz
PGS004274
(GenoBoost_inflammatory_bowel_disease_4)
PGP000546
|
Ohta R
et al.
Nat Commun (2024)
Inflammatory bowel disease
inflammatory bowel disease
40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004274/ScoringFiles/PGS004274.txt.gz
PGS004282
(GenoBoost_all-cause_dementia_2)
PGP000546
|
Ohta R
et al.
Nat Commun (2024)
All-cause dementia
dementia
40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004282/ScoringFiles/PGS004282.txt.gz
PGS004289
(GenoBoost_alzheimer_s_disease_4)
PGP000546
|
Ohta R
et al.
Nat Commun (2024)
Alzheimer's disease
Alzheimer disease
40
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004289/ScoringFiles/PGS004289.txt.gz
PGS000149
(CRC41)
PGP000072
|
Smith T
et al.
Br J Cancer (2018)
Colorectal cancer
colorectal cancer
41
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000149/ScoringFiles/PGS000149.txt.gz
PGS000374
(PRSWEB_PHECODE153_UKBB-SAIGE-HRC-X153_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Colorectal cancer
colorectal cancer
41
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000374/ScoringFiles/PGS000374.txt.gz
PGS000513
(PRSWEB_PHECODE174.1_UKBB-SAIGE-HRC-X174.1_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Breast cancer (female)
breast carcinoma
41
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000513/ScoringFiles/PGS000513.txt.gz
PGS000803
(wGRS41_SLE)
PGP000192
|
Kawai VK
et al.
Lupus (2021)
Systemic lupus erythematosus
systemic lupus erythematosus
41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000803/ScoringFiles/PGS000803.txt.gz
PGS000874
(PRS41_CLL)
PGP000220
|
Kleinstern G
et al.
Blood (2018)
Chronic lymphocytic leukemia
chronic lymphocytic leukemia
41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000874/ScoringFiles/PGS000874.txt.gz
PGS001270
(GBE_HC151)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Multiple sclerosis
multiple sclerosis
41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001270/ScoringFiles/PGS001270.txt.gz
PGS004892
(TNBC_PRS41)
PGP000620
|
Sun X
et al.
Cancer Res (2024)
Triple negative breast cancer
triple-negative breast cancer
41
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004892/ScoringFiles/PGS004892.txt.gz
PGS000482
(PRSWEB_PHECODE174.1_C50_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Breast cancer (female)
breast carcinoma
42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000482/ScoringFiles/PGS000482.txt.gz
PGS000589
(PRSWEB_PHECODE185_UKBB-SAIGE-HRC-X185_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Prostate cancer
prostate carcinoma
42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000589/ScoringFiles/PGS000589.txt.gz
PGS000760
(VIT)
PGP000164
|
Khan Z
et al.
Nat Commun (2021)
Vitiligo
Vitiligo
42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000760/ScoringFiles/PGS000760.txt.gz
PGS001326
(GBE_HC431)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Emphysema
emphysema
42
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001326/ScoringFiles/PGS001326.txt.gz
PGS003295
(ExPRSweb_CysC_eGFRcys-overall-EA_PT_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Estimated glomerular filtration rate (Cystatin C)
cystatin C measurement
,
glomerular filtration rate
42
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003295/ScoringFiles/PGS003295.txt.gz
PGS003397
(PRS-42ASN)
PGP000415
|
Jee YH
et al.
Int J Epidemiol (2022)
Breast cancer
breast carcinoma
42
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003397/ScoringFiles/PGS003397.txt.gz
PGS000304
(GRS43_HbA1c)
PGP000092
|
Xie T
et al.
Circ Genom Precis Med (2020)
HbA1c
HbA1c measurement
43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000304/ScoringFiles/PGS000304.txt.gz
PGS000667
(LPA_GRS43)
PGP000127
|
Trinder M
et al.
JAMA Cardiol (2020)
Lipoprotein A
lipoprotein A measurement
43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000667/ScoringFiles/PGS000667.txt.gz
PGS000750
(PRS_43)
PGP000155
|
Bobbili DR
et al.
J Med Genet (2020)
Parkinson's disease
Parkinson disease
43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000750/ScoringFiles/PGS000750.txt.gz
PGS002305
(PRS43_CLL)
PGP000328
|
Choi J
et al.
Int J Cancer (2020)
Chronic lymphoid leukemia
lymphoid leukemia
43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002305/ScoringFiles/PGS002305.txt.gz
PGS003453
(PRS43_CLL)
PGP000448
|
Berndt SI
et al.
Leukemia (2022)
Chronic lymphocytic leukemia
chronic lymphocytic leukemia
43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003453/ScoringFiles/PGS003453.txt.gz
PGS004246
(PRS43_lung)
PGP000542
|
Kim ES
et al.
NPJ Precis Oncol (2023)
Lung cancer
lung carcinoma
43
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004246/ScoringFiles/PGS004246.txt.gz
PGS000050
(PRS44)
PGP000035
|
Wen W
et al.
Breast Cancer Res (2016)
Breast cancer
breast carcinoma
44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000050/ScoringFiles/PGS000050.txt.gz
PGS000604
(PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Malignant neoplasm of testis
testicular carcinoma
44
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000604/ScoringFiles/PGS000604.txt.gz
PGS000648
(PRSWEB_PHECODE204.12_GWAS-Catalog-r2019-05-03-X204.12_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Chronic lymphocytic leukemia
chronic lymphocytic leukemia
44
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000648/ScoringFiles/PGS000648.txt.gz
PGS000718
(PRPBB_44)
PGP000134
|
Lanfear DE
et al.
Circ Heart Fail (2020)
Beta-blocker survival benefit
response to beta blocker
44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000718/ScoringFiles/PGS000718.txt.gz
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