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EFO_0001645
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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS000462
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Squamous cell carcinoma
squamous cell carcinoma
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000462/ScoringFiles/PGS000462.txt.gz
PGS000610
(PRSWEB_PHECODE189.2_GWAS-Catalog-r2019-05-03-X189.2_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Bladder cancer
urinary bladder carcinoma
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000610/ScoringFiles/PGS000610.txt.gz
PGS000611
(PRSWEB_PHECODE189.2_GWAS-Catalog-r2019-05-03-X189.2_P_5e-08_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Bladder cancer
urinary bladder carcinoma
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000611/ScoringFiles/PGS000611.txt.gz
PGS000612
(PRSWEB_PHECODE189.2_GWAS-Catalog-r2019-05-03-X189.2_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Bladder cancer
urinary bladder carcinoma
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000612/ScoringFiles/PGS000612.txt.gz
PGS000897
(GLGC_2021_SAS_LDL_PRS_weights_PT)
PGP000230
|
Graham SE
et al.
Nature (2021)
LDL cholesterol
low density lipoprotein cholesterol measurement
13
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000897/ScoringFiles/PGS000897.txt.gz
PGS002925
(ExPRSweb_FPG_FGovertime-corrected_PT_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Fasting plasma glucose
fasting blood glucose measurement
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002925/ScoringFiles/PGS002925.txt.gz
PGS002926
(ExPRSweb_FPG_FGovertime-corrected_PLINK_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Fasting plasma glucose
fasting blood glucose measurement
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002926/ScoringFiles/PGS002926.txt.gz
PGS003040
(ExPRSweb_PUFAs_MAGNETIC-otPUFA_PT_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Polyunsatturated fatty acids
polyunsaturated fatty acid measurement
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003040/ScoringFiles/PGS003040.txt.gz
PGS003041
(ExPRSweb_PUFAs_MAGNETIC-otPUFA_PLINK_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Polyunsatturated fatty acids
polyunsaturated fatty acid measurement
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003041/ScoringFiles/PGS003041.txt.gz
PGS003736
(PRS13_BlC)
PGP000470
|
Xin J
et al.
EBioMedicine (2023)
Bladder cancer
urinary bladder cancer
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003736/ScoringFiles/PGS003736.txt.gz
PGS004108
(pt_clump.auto.GCST005838.Stroke)
PGP000517
|
Monti R
et al.
Am J Hum Genet (2024)
Stroke
stroke
13
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004108/ScoringFiles/PGS004108.txt.gz
PGS004222
(GRS13_gout)
PGP000522
|
Wu Q
et al.
J Psychosom Res (2023)
Gout
gout
13
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004222/ScoringFiles/PGS004222.txt.gz
PGS000081
(CC_Oral)
PGP000050
|
Graff RE
et al.
Nat Commun (2021)
Oral cavity and pharyngeal cancers
oral cavity cancer
,
pharynx cancer
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000081/ScoringFiles/PGS000081.txt.gz
PGS000151
(SC_GRS)
PGP000074
|
Xin J
et al.
Gene (2018)
Colorectal cancer
colorectal cancer
14
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000151/ScoringFiles/PGS000151.txt.gz
PGS000353
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Any cancer
cancer
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000353/ScoringFiles/PGS000353.txt.gz
PGS000391
(PRSWEB_PHECODE165.1_GWAS-Catalog-r2019-05-03-X165.1_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Lung and bronchus cancer
tracheal cancer
,
bronchus cancer
,
lung cancer
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000391/ScoringFiles/PGS000391.txt.gz
PGS000464
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Squamous cell carcinoma
squamous cell carcinoma
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000464/ScoringFiles/PGS000464.txt.gz
PGS000522
(PRSWEB_PHECODE174.1_iCOGS-ER-negative-BRCA_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Breast cancer (female)
breast carcinoma
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000522/ScoringFiles/PGS000522.txt.gz
PGS000723
(PRS_Bladder)
PGP000135
|
Jia G
et al.
JNCI Cancer Spectr (2020)
Bladder cancer
urinary bladder carcinoma
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000723/ScoringFiles/PGS000723.txt.gz
PGS000731
(PRS_SCC)
PGP000138
|
Fontanillas P
et al.
Nat Commun (2021)
Squamous cell carcinoma
squamous cell carcinoma
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000731/ScoringFiles/PGS000731.txt.gz
- Check
Terms/Licenses
PGS000755
(PRS_SUA)
PGP000161
|
Cho SK
et al.
Sci Rep (2020)
Serum uric acid levels
uric acid measurement
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000755/ScoringFiles/PGS000755.txt.gz
PGS000767
(GRS14)
PGP000174
|
Guffanti G
et al.
Transl Psychiatry (2019)
Depression
depressive symptom measurement
,
major depressive disorder
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000767/ScoringFiles/PGS000767.txt.gz
PGS000792
(CC_Oral_IV)
PGP000186
|
Kachuri L
et al.
Nat Commun (2020)
Oral cavity and pharyngeal cancers
oral cavity cancer
,
pharynx cancer
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000792/ScoringFiles/PGS000792.txt.gz
PGS000871
(IS_14)
PGP000214
|
Aksit MA
et al.
J Clin Endocrinol Metab (2020)
Insulin secretion
insulin secretion measurement
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000871/ScoringFiles/PGS000871.txt.gz
PGS002298
(PRS14_esophageal)
PGP000328
|
Choi J
et al.
Int J Cancer (2020)
Esophageal cancer
esophageal carcinoma
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002298/ScoringFiles/PGS002298.txt.gz
PGS002751
(GRSrare)
PGP000363
|
Sapkota Y
et al.
Nat Med (2022)
Body mass index (BMI)
body mass index
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002751/ScoringFiles/PGS002751.txt.gz
PGS003419
(PRState_Trans)
PGP000430
|
Pagadala MS
et al.
BMC Cancer (2022)
Prostate cancer
prostate cancer
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003419/ScoringFiles/PGS003419.txt.gz
PGS003447
(PRS14_endo)
PGP000447
|
Kloeve-Mogensen K
et al.
Front Reprod Health (2021)
Endometriosis
endometriosis
14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003447/ScoringFiles/PGS003447.txt.gz
PGS003744
(PRS14_RC)
PGP000470
|
Xin J
et al.
EBioMedicine (2023)
Renal cancer
renal carcinoma
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003744/ScoringFiles/PGS003744.txt.gz
PGS004239
(PRS14AAD)
PGP000538
|
Aranda-Guillén M
et al.
J Intern Med (2023)
Autoimmune Addison's disease
chronic primary adrenal insufficiency
14
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004239/ScoringFiles/PGS004239.txt.gz
PGS000037
(PGS_AST)
PGP000025
|
Belsky DW
et al.
Lancet Respir Med (2013)
Asthma
asthma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000037/ScoringFiles/PGS000037.txt.gz
PGS000068
(PRS_EOC)
PGP000048
|
Yang X
et al.
J Med Genet (2018)
Epithelial ovarian cancer
ovarian carcinoma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000068/ScoringFiles/PGS000068.txt.gz
PGS000069
(PRS_sEOC)
PGP000048
|
Yang X
et al.
J Med Genet (2018)
Serous epithelial ovarian cancer
ovarian serous carcinoma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000069/ScoringFiles/PGS000069.txt.gz
PGS000071
(CC_Bladder)
PGP000050
|
Graff RE
et al.
Nat Commun (2021)
Bladder cancer
urinary bladder carcinoma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000071/ScoringFiles/PGS000071.txt.gz
PGS000355
(PRSWEB_PHECODE10001_UKBB-SAIGE-HRC-X10001_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Any cancer
cancer
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000355/ScoringFiles/PGS000355.txt.gz
PGS000431
(PRSWEB_PHECODE172.1_UKBB-SAIGE-HRC-X172.1_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history)
melanoma
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000431/ScoringFiles/PGS000431.txt.gz
PGS000555
(PRSWEB_PHECODE184.11_Phelan-LSASBOC_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Malignant neoplasm of ovary
ovarian neoplasm
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000555/ScoringFiles/PGS000555.txt.gz
PGS000613
(PRSWEB_PHECODE189.2_GWAS-Catalog-r2019-05-03-X189.2_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Bladder cancer
urinary bladder carcinoma
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000613/ScoringFiles/PGS000613.txt.gz
PGS000722
(PRS_Kidney)
PGP000135
|
Jia G
et al.
JNCI Cancer Spectr (2020)
Kidney cancer
renal carcinoma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000722/ScoringFiles/PGS000722.txt.gz
PGS000782
(CC_Bladder_IV)
PGP000186
|
Kachuri L
et al.
Nat Commun (2020)
Bladder cancer
urinary bladder carcinoma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000782/ScoringFiles/PGS000782.txt.gz
PGS001348
(GBE_HC1584)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Alzheimer's disease (algorithmically-defined)
Alzheimer disease
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001348/ScoringFiles/PGS001348.txt.gz
PGS001778
(PRS15_BC)
PGP000259
|
Yiangou K
et al.
Cancers (Basel) (2021)
Breast cancer
breast carcinoma
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001778/ScoringFiles/PGS001778.txt.gz
PGS002283
(GRS15_NAFLD)
PGP000312
|
Schnurr TM
et al.
Hepatol Commun (2022)
Nonalcoholic fatty liver disease
non-alcoholic fatty liver disease
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002283/ScoringFiles/PGS002283.txt.gz
PGS003181
(ExPRSweb_VitD_100021-raw_PLINK_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Vitamin D
vitamin D measurement
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003181/ScoringFiles/PGS003181.txt.gz
PGS003186
(ExPRSweb_VitD_29343764-GCST005367_PLINK_MGI_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Vitamin D
vitamin D measurement
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003186/ScoringFiles/PGS003186.txt.gz
PGS003305
(ExPRSweb_CysC_CKDGen-1000Genomes-DiscoveryMeta-eGFRcys_PT_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Estimated glomerular filtration rate (Cystatin C)
cystatin C measurement
,
glomerular filtration rate
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003305/ScoringFiles/PGS003305.txt.gz
PGS003306
(ExPRSweb_CysC_CKDGen-1000Genomes-DiscoveryMeta-eGFRcys_PLINK_UKB_20211120)
PGP000393
|
Ma Y
et al.
Am J Hum Genet (2022)
Estimated glomerular filtration rate (Cystatin C)
cystatin C measurement
,
glomerular filtration rate
15
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003306/ScoringFiles/PGS003306.txt.gz
PGS003448
(PRS15_ALL)
PGP000448
|
Berndt SI
et al.
Leukemia (2022)
Acute lymphoblastic leukemia
acute lymphoblastic leukemia
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003448/ScoringFiles/PGS003448.txt.gz
PGS003717
(R_subiculum_body_UKBB_EUR_GWAS)
PGP000464
|
Liu N
et al.
Nat Genet (2023)
Right subiculum body volume
subiculum volume
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003717/ScoringFiles/PGS003717.txt.gz
PGS004227
(ad_apoe_gw_pgs)
PGP000527
|
Green RE
et al.
Alzheimers Res Ther (2023)
Alzheimer's disease
Alzheimer disease
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004227/ScoringFiles/PGS004227.txt.gz
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