Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004624
(HDL_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,688,569
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004624/ScoringFiles/PGS004624.txt.gz
PGS004625
(HDL_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 291,154
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004625/ScoringFiles/PGS004625.txt.gz
PGS004626
(HDL_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004626/ScoringFiles/PGS004626.txt.gz
PGS004627
(HDL_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 54,812
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004627/ScoringFiles/PGS004627.txt.gz
PGS004628
(HDL_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 847,389
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004628/ScoringFiles/PGS004628.txt.gz
PGS004629
(HDL_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,731,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004629/ScoringFiles/PGS004629.txt.gz
PGS004630
(HDL_EAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 291,154
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004630/ScoringFiles/PGS004630.txt.gz
PGS004631
(HDL_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004631/ScoringFiles/PGS004631.txt.gz
PGS004632
(HDL_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 9,116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004632/ScoringFiles/PGS004632.txt.gz
PGS004633
(HDL_SAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,476,939
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004633/ScoringFiles/PGS004633.txt.gz
PGS004634
(HDL_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,731,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004634/ScoringFiles/PGS004634.txt.gz
PGS004635
(HDL_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 291,154
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004635/ScoringFiles/PGS004635.txt.gz
PGS004636
(HDL_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004636/ScoringFiles/PGS004636.txt.gz
PGS004637
(LDL_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 173
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004637/ScoringFiles/PGS004637.txt.gz
PGS004638
(LDL_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,683,941
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004638/ScoringFiles/PGS004638.txt.gz
PGS004639
(LDL_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,794,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004639/ScoringFiles/PGS004639.txt.gz
PGS004640
(LDL_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 107,449
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004640/ScoringFiles/PGS004640.txt.gz
PGS004641
(LDL_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004641/ScoringFiles/PGS004641.txt.gz
PGS004642
(LDL_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 8,643
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004642/ScoringFiles/PGS004642.txt.gz
PGS004643
(LDL_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,194,231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004643/ScoringFiles/PGS004643.txt.gz
PGS004644
(LDL_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,354,681
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004644/ScoringFiles/PGS004644.txt.gz
PGS004645
(LDL_EAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 107,449
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004645/ScoringFiles/PGS004645.txt.gz
PGS004646
(LDL_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004646/ScoringFiles/PGS004646.txt.gz
PGS004647
(LDL_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 307
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004647/ScoringFiles/PGS004647.txt.gz
PGS004648
(LDL_SAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,511,084
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004648/ScoringFiles/PGS004648.txt.gz
PGS004649
(LDL_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,794,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004649/ScoringFiles/PGS004649.txt.gz
PGS004650
(LDL_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 107,449
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004650/ScoringFiles/PGS004650.txt.gz
PGS004651
(LDL_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004651/ScoringFiles/PGS004651.txt.gz
PGS004652
(logTG_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 446
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004652/ScoringFiles/PGS004652.txt.gz
PGS004653
(logTG_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,682,390
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004653/ScoringFiles/PGS004653.txt.gz
PGS004654
(logTG_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004654/ScoringFiles/PGS004654.txt.gz
PGS004655
(logTG_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004655/ScoringFiles/PGS004655.txt.gz
PGS004656
(logTG_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004656/ScoringFiles/PGS004656.txt.gz
PGS004657
(logTG_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 221
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004657/ScoringFiles/PGS004657.txt.gz
PGS004658
(logTG_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,192,539
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004658/ScoringFiles/PGS004658.txt.gz
PGS004659
(logTG_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,722,077
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004659/ScoringFiles/PGS004659.txt.gz
PGS004660
(logTG_EAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004660/ScoringFiles/PGS004660.txt.gz
PGS004661
(logTG_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004661/ScoringFiles/PGS004661.txt.gz
PGS004662
(logTG_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 12,717
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004662/ScoringFiles/PGS004662.txt.gz
PGS004663
(logTG_SAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,510,317
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004663/ScoringFiles/PGS004663.txt.gz
PGS004664
(logTG_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004664/ScoringFiles/PGS004664.txt.gz
PGS004665
(logTG_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004665/ScoringFiles/PGS004665.txt.gz
PGS004666
(logTG_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004666/ScoringFiles/PGS004666.txt.gz
PGS004667
(TC_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,830
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004667/ScoringFiles/PGS004667.txt.gz
PGS004668
(TC_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,691,065
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004668/ScoringFiles/PGS004668.txt.gz
PGS004669
(TC_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004669/ScoringFiles/PGS004669.txt.gz
PGS004670
(TC_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 158,252
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004670/ScoringFiles/PGS004670.txt.gz
PGS004671
(TC_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004671/ScoringFiles/PGS004671.txt.gz
PGS004672
(TC_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 65,005
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004672/ScoringFiles/PGS004672.txt.gz
PGS004673
(TC_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 823,148
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004673/ScoringFiles/PGS004673.txt.gz
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