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EFO_0001645
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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS004584
(PRSice_T3)
PGP000563
|
Yang Z
et al.
Blood (2023)
Platelet count during the third trimester
platelet count
5,597
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004584/ScoringFiles/PGS004584.txt.gz
PGS004585
(PRSice_GT)
PGP000563
|
Yang Z
et al.
Blood (2023)
Gestational thrombocytopenia
Thrombocytopenia
475,029
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004585/ScoringFiles/PGS004585.txt.gz
PGS004587
(PRS23_AD)
PGP000566
|
Gu X
et al.
Ecotoxicol Environ Saf (2023)
Atopic dermatitis
atopic eczema
23
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004587/ScoringFiles/PGS004587.txt.gz
PGS004588
(PRS39_Eur)
PGP000567
|
Jung SH
et al.
JAMA Netw Open (2022)
Alzheimer's disease
Alzheimer disease
39
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004588/ScoringFiles/PGS004588.txt.gz
PGS004589
(PRS80_trans)
PGP000567
|
Jung SH
et al.
JAMA Netw Open (2022)
Alzheimer's disease
Alzheimer disease
80
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004589/ScoringFiles/PGS004589.txt.gz
PGS004590
(PRS363_rand_eff)
PGP000569
|
Lake J
et al.
Mol Psychiatry (2023)
Alzheimer's disease
Alzheimer disease
363
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004590/ScoringFiles/PGS004590.txt.gz
PGS004591
(PRS17_MDD)
PGP000570
|
Li D
et al.
BMC Med (2023)
Major depressive disorder
unipolar depression
17
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004591/ScoringFiles/PGS004591.txt.gz
PGS004592
(PRS_KC)
PGP000571
|
Liyanage UE
et al.
J Eur Acad Dermatol Venereol (2022)
Keratinocyte cancer
keratinocyte carcinoma
78
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004592/ScoringFiles/PGS004592.txt.gz
PGS004593
(pe)
PGP000574
|
Nurkkala J
et al.
J Hypertens (2022)
Preeclampsia
preeclampsia
1,102,059
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004593/ScoringFiles/PGS004593.txt.gz
PGS004594
(ukb.sbp.female)
PGP000574
|
Nurkkala J
et al.
J Hypertens (2022)
Systolic blood pressure
systolic blood pressure
1,097,355
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004594/ScoringFiles/PGS004594.txt.gz
PGS004595
(PRS_CHD)
PGP000575
|
Oni-Orisan A
et al.
Clin Pharmacol Ther (2022)
Coronary heart disease
coronary artery disease
164
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004595/ScoringFiles/PGS004595.txt.gz
PGS004596
(PRS64_CHD)
PGP000576
|
Peng H
et al.
Nutrients (2023)
Coronary heart disease
coronary artery disease
64
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004596/ScoringFiles/PGS004596.txt.gz
PGS004597
(PRS32_IS)
PGP000576
|
Peng H
et al.
Nutrients (2023)
Ischemic stroke
stroke
,
Ischemic stroke
32
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004597/ScoringFiles/PGS004597.txt.gz
PGS004598
(PRS12_HF)
PGP000576
|
Peng H
et al.
Nutrients (2023)
Heart failure
heart failure
12
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004598/ScoringFiles/PGS004598.txt.gz
PGS004599
(PRS102_Pca)
PGP000577
|
Ruan X
et al.
J Clin Med (2023)
Prostate cancer
prostate carcinoma
102
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004599/ScoringFiles/PGS004599.txt.gz
PGS004600
(PRS_AD83)
PGP000578
|
Tomassen J
et al.
BMC Neurol (2022)
Alzheimer's disease
Alzheimer disease
83
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004600/ScoringFiles/PGS004600.txt.gz
PGS004601
(PRS17_Pca)
PGP000579
|
Wu Y
et al.
Clin Genet (2023)
Prostate cancer
prostate carcinoma
17
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004601/ScoringFiles/PGS004601.txt.gz
PGS004602
(PRS424_T2D)
PGP000580
|
Zhuang P
et al.
Diabetes Care (2021)
Type 2 diabetes (T2D)
type 2 diabetes mellitus
424
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004602/ScoringFiles/PGS004602.txt.gz
PGS004606
(AMD-IAMDGC-EUR)
PGP000582
|
Gorman BR
et al.
medRxiv (2022)
|
Pre
Age-related macular degeneration
age-related macular degeneration
1,000,946
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004606/ScoringFiles/PGS004606.txt.gz
PGS004607
(AMD-MVP-AFR)
PGP000582
|
Gorman BR
et al.
medRxiv (2022)
|
Pre
Age-related macular degeneration
age-related macular degeneration
1,067,520
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004607/ScoringFiles/PGS004607.txt.gz
PGS004608
(neuroticism)
PGP000584
|
Forthman KL
et al.
J Psychiatr Res (2023)
Neuroticism
neuroticism measurement
1,000,537
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004608/ScoringFiles/PGS004608.txt.gz
PGS004609
(adult_BMI)
PGP000585
|
Hawkes G
et al.
Diabetologia (2023)
Body mass index (BMI)
body mass index
1,127
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004609/ScoringFiles/PGS004609.txt.gz
PGS004610
(child_BMI)
PGP000585
|
Hawkes G
et al.
Diabetologia (2023)
Body mass index (BMI)
body mass index
306
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004610/ScoringFiles/PGS004610.txt.gz
PGS004611
(RORP_PRS)
PGP000590
|
Shieh Y
et al.
NPJ Precis Oncol (2023)
Breast cancer
breast carcinoma
76
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004611/ScoringFiles/PGS004611.txt.gz
PGS004612
(PRSECG_AI)
PGP000591
|
Wang X
et al.
Circ Genom Precis Med (2023)
ECG-AI predicted 5-year risk of atrial fibrillation
atrial fibrillation
1,117,399
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004612/ScoringFiles/PGS004612.txt.gz
PGS004613
(PRSCHARGE_AF)
PGP000591
|
Wang X
et al.
Circ Genom Precis Med (2023)
CHARGE-AF predicted 5-year risk of atrial fibrillation
atrial fibrillation
1,117,400
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004613/ScoringFiles/PGS004613.txt.gz
PGS004614
(DivD_SNPWeights)
PGP000592
|
Wu Y
et al.
Cell Genom (2023)
Diverticular disease
diverticular disease
1,082,282
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004614/ScoringFiles/PGS004614.txt.gz
PGS004622
(HDL_AFR_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
15,978
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004622/ScoringFiles/PGS004622.txt.gz
PGS004623
(HDL_AFR_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,683,003
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004623/ScoringFiles/PGS004623.txt.gz
PGS004624
(HDL_AFR_PROSPER)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,688,569
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004624/ScoringFiles/PGS004624.txt.gz
PGS004625
(HDL_AFR_weighted_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
291,154
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004625/ScoringFiles/PGS004625.txt.gz
PGS004626
(HDL_AFR_weighted_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004626/ScoringFiles/PGS004626.txt.gz
PGS004627
(HDL_EAS_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
54,812
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004627/ScoringFiles/PGS004627.txt.gz
PGS004628
(HDL_EAS_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
847,389
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004628/ScoringFiles/PGS004628.txt.gz
PGS004629
(HDL_EAS_PROSPER)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,731,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004629/ScoringFiles/PGS004629.txt.gz
PGS004630
(HDL_EAS_weighted_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
291,154
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004630/ScoringFiles/PGS004630.txt.gz
PGS004631
(HDL_EAS_weighted_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004631/ScoringFiles/PGS004631.txt.gz
PGS004632
(HDL_SAS_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
9,116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004632/ScoringFiles/PGS004632.txt.gz
PGS004633
(HDL_SAS_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,476,939
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004633/ScoringFiles/PGS004633.txt.gz
PGS004634
(HDL_SAS_PROSPER)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,731,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004634/ScoringFiles/PGS004634.txt.gz
PGS004635
(HDL_SAS_weighted_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
291,154
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004635/ScoringFiles/PGS004635.txt.gz
PGS004636
(HDL_SAS_weighted_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
HDL cholesterol
high density lipoprotein cholesterol measurement
1,871,796
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004636/ScoringFiles/PGS004636.txt.gz
PGS004637
(LDL_AFR_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
173
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004637/ScoringFiles/PGS004637.txt.gz
PGS004638
(LDL_AFR_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,683,941
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004638/ScoringFiles/PGS004638.txt.gz
PGS004639
(LDL_AFR_PROSPER)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,794,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004639/ScoringFiles/PGS004639.txt.gz
PGS004640
(LDL_AFR_weighted_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
107,449
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004640/ScoringFiles/PGS004640.txt.gz
PGS004641
(LDL_AFR_weighted_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004641/ScoringFiles/PGS004641.txt.gz
PGS004642
(LDL_EAS_lassosum2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
8,643
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004642/ScoringFiles/PGS004642.txt.gz
PGS004643
(LDL_EAS_ldpred2)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,194,231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004643/ScoringFiles/PGS004643.txt.gz
PGS004644
(LDL_EAS_PROSPER)
PGP000595
|
Zhang J
et al.
Nat Commun (2024)
LDL cholesterol
low density lipoprotein cholesterol measurement
1,354,681
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004644/ScoringFiles/PGS004644.txt.gz
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