Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS004682
(height_AFR_lassosum2)
PGP000595 |
Zhang J et al. Nat Commun (2024)
Height body height 906
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004682/ScoringFiles/PGS004682.txt.gz
PGS004683
(height_AFR_ldpred2)
PGP000595 |
Zhang J et al. Nat Commun (2024)
Height body height 774,968
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004683/ScoringFiles/PGS004683.txt.gz
PGS004684
(height_AFR_PROSPER)
PGP000595 |
Zhang J et al. Nat Commun (2024)
Height body height 859,897
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004684/ScoringFiles/PGS004684.txt.gz
PGS004685
(height_AFR_weighted_lassosum2)
PGP000595 |
Zhang J et al. Nat Commun (2024)
Height body height 279,186
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004685/ScoringFiles/PGS004685.txt.gz
PGS004686
(height_AFR_weighted_ldpred2)
PGP000595 |
Zhang J et al. Nat Commun (2024)
Height body height 872,587
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004686/ScoringFiles/PGS004686.txt.gz
PGS004687
(bladder_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Bladder cancer urinary bladder carcinoma 1,077,775
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004687/ScoringFiles/PGS004687.txt.gz
PGS004688
(breast_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Breast cancer breast carcinoma 1,044,110
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004688/ScoringFiles/PGS004688.txt.gz
PGS004689
(colorectal_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Colorectal cancer colorectal carcinoma 1,077,789
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004689/ScoringFiles/PGS004689.txt.gz
PGS004690
(kidney_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Kidney cancer renal carcinoma 6,351,669
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004690/ScoringFiles/PGS004690.txt.gz
PGS004691
(lung_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Lung cancer lung carcinoma 950,353
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004691/ScoringFiles/PGS004691.txt.gz
PGS004692
(ovarian_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Ovarian cancer ovarian carcinoma 6,385,666
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004692/ScoringFiles/PGS004692.txt.gz
PGS004693
(pancreatic_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Pancreatic cancer pancreatic carcinoma 6,351,686
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004693/ScoringFiles/PGS004693.txt.gz
PGS004694
(prostate_cancer)
PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
Prostate cancer prostate carcinoma 1,016,708
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004694/ScoringFiles/PGS004694.txt.gz
PGS004695
(PRS23_IPF)
PGP000598 |
Wang X et al. Chemosphere (2023)
Idiopathic pulmonary fibrosis idiopathic pulmonary fibrosis 23
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004695/ScoringFiles/PGS004695.txt.gz
PGS004696
(multi_anc_hg37CSx)
PGP000602 |
Smith JL et al. Circ Genom Precis Med (2024)
Coronary heart disease coronary artery disease 1,289,980
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004696/ScoringFiles/PGS004696.txt.gz
PGS004697
(eur_anc_hg37CSx)
PGP000602 |
Smith JL et al. Circ Genom Precis Med (2024)
Coronary heart disease coronary artery disease 1,120,251
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004697/ScoringFiles/PGS004697.txt.gz
PGS004698
(multi_anc_hg37PT)
PGP000602 |
Smith JL et al. Circ Genom Precis Med (2024)
Coronary heart disease coronary artery disease 542,218
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004698/ScoringFiles/PGS004698.txt.gz
PGS004699
(Non-HLA-GRS)
PGP000603 |
Loginovic P et al. Nat Commun (2024)
Multiple sclerosis multiple sclerosis 307
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004699/ScoringFiles/PGS004699.txt.gz
PGS004700
(HLA-GRS)
PGP000603 |
Loginovic P et al. Nat Commun (2024)
Multiple sclerosis multiple sclerosis 12
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004700/ScoringFiles/PGS004700.txt.gz
PGS004701
(a1c_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
HbA1c HbA1c measurement 1,107,927
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004701/ScoringFiles/PGS004701.txt.gz
PGS004702
(a1c_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
HbA1c HbA1c measurement 6,652,699
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004702/ScoringFiles/PGS004702.txt.gz
PGS004703
(a1c_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
HbA1c HbA1c measurement 3,872,159
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004703/ScoringFiles/PGS004703.txt.gz
PGS004704
(a1c_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
HbA1c HbA1c measurement 6,652,699
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004704/ScoringFiles/PGS004704.txt.gz
PGS004705
(afib_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Atrial Fibrillation atrial fibrillation 3,575,124
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004705/ScoringFiles/PGS004705.txt.gz
PGS004706
(afib_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Atrial Fibrillation atrial fibrillation 3,576,958
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004706/ScoringFiles/PGS004706.txt.gz
PGS004707
(Albumin_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Albumin serum albumin measurement 589,303
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004707/ScoringFiles/PGS004707.txt.gz
PGS004708
(Albumin_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Albumin serum albumin measurement 2,071,924
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004708/ScoringFiles/PGS004708.txt.gz
PGS004709
(Albumin_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Albumin serum albumin measurement 2,659,200
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004709/ScoringFiles/PGS004709.txt.gz
PGS004710
(Albumin_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Albumin serum albumin measurement 2,071,924
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004710/ScoringFiles/PGS004710.txt.gz
PGS004711
(ALP_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alkaline phosphatase alkaline phosphatase measurement 634,277
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004711/ScoringFiles/PGS004711.txt.gz
PGS004712
(ALP_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alkaline phosphatase alkaline phosphatase measurement 1,704,295
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004712/ScoringFiles/PGS004712.txt.gz
PGS004713
(ALP_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alkaline phosphatase alkaline phosphatase measurement 4,268,599
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004713/ScoringFiles/PGS004713.txt.gz
PGS004714
(ALP_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alkaline phosphatase alkaline phosphatase measurement 1,704,295
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004714/ScoringFiles/PGS004714.txt.gz
PGS004715
(ALT_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alanine aminotransferase serum alanine aminotransferase measurement 559,731
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004715/ScoringFiles/PGS004715.txt.gz
PGS004716
(ALT_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alanine aminotransferase serum alanine aminotransferase measurement 2,283,693
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004716/ScoringFiles/PGS004716.txt.gz
PGS004717
(ALT_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alanine aminotransferase serum alanine aminotransferase measurement 1,051,633
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004717/ScoringFiles/PGS004717.txt.gz
PGS004718
(ALT_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Alanine aminotransferase serum alanine aminotransferase measurement 2,283,693
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004718/ScoringFiles/PGS004718.txt.gz
PGS004719
(AST_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Aspartate aminotransferase level aspartate aminotransferase measurement 519,241
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004719/ScoringFiles/PGS004719.txt.gz
PGS004720
(AST_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Aspartate aminotransferase level aspartate aminotransferase measurement 1,000,300
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004720/ScoringFiles/PGS004720.txt.gz
PGS004721
(AST_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Aspartate aminotransferase level aspartate aminotransferase measurement 1,196,185
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004721/ScoringFiles/PGS004721.txt.gz
PGS004722
(AST_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Aspartate aminotransferase level aspartate aminotransferase measurement 868,009
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004722/ScoringFiles/PGS004722.txt.gz
PGS004723
(asthma_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Asthma asthma 985,316
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004723/ScoringFiles/PGS004723.txt.gz
PGS004724
(asthma_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Asthma asthma 2,342,250
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004724/ScoringFiles/PGS004724.txt.gz
PGS004725
(asthma_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Asthma asthma 3,972,232
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004725/ScoringFiles/PGS004725.txt.gz
PGS004726
(asthma_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Asthma asthma 2,342,250
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004726/ScoringFiles/PGS004726.txt.gz
PGS004727
(Basophils_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Basophil count basophil count 6,503
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004727/ScoringFiles/PGS004727.txt.gz
PGS004728
(Basophils_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Basophil count basophil count 6,132,012
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004728/ScoringFiles/PGS004728.txt.gz
PGS004729
(Basophils_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Basophil count basophil count 1,538,675
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004729/ScoringFiles/PGS004729.txt.gz
PGS004730
(Basophils_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Basophil count basophil count 6,132,012
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004730/ScoringFiles/PGS004730.txt.gz
PGS004731
(Bilirubin_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Total bilirubin bilirubin measurement 96,003
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004731/ScoringFiles/PGS004731.txt.gz