Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004645
(LDL_EAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 107,449
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004645/ScoringFiles/PGS004645.txt.gz
PGS004646
(LDL_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004646/ScoringFiles/PGS004646.txt.gz
PGS004647
(LDL_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 307
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004647/ScoringFiles/PGS004647.txt.gz
PGS004648
(LDL_SAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,511,084
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004648/ScoringFiles/PGS004648.txt.gz
PGS004649
(LDL_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,794,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004649/ScoringFiles/PGS004649.txt.gz
PGS004650
(LDL_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 107,449
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004650/ScoringFiles/PGS004650.txt.gz
PGS004651
(LDL_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,879,609
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004651/ScoringFiles/PGS004651.txt.gz
PGS004652
(logTG_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 446
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004652/ScoringFiles/PGS004652.txt.gz
PGS004653
(logTG_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,682,390
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004653/ScoringFiles/PGS004653.txt.gz
PGS004654
(logTG_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004654/ScoringFiles/PGS004654.txt.gz
PGS004655
(logTG_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004655/ScoringFiles/PGS004655.txt.gz
PGS004656
(logTG_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004656/ScoringFiles/PGS004656.txt.gz
PGS004657
(logTG_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 221
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004657/ScoringFiles/PGS004657.txt.gz
PGS004658
(logTG_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,192,539
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004658/ScoringFiles/PGS004658.txt.gz
PGS004659
(logTG_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,722,077
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004659/ScoringFiles/PGS004659.txt.gz
PGS004660
(logTG_EAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004660/ScoringFiles/PGS004660.txt.gz
PGS004661
(logTG_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004661/ScoringFiles/PGS004661.txt.gz
PGS004662
(logTG_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 12,717
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004662/ScoringFiles/PGS004662.txt.gz
PGS004663
(logTG_SAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,510,317
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004663/ScoringFiles/PGS004663.txt.gz
PGS004664
(logTG_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,775,011
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004664/ScoringFiles/PGS004664.txt.gz
PGS004665
(logTG_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 298,999
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004665/ScoringFiles/PGS004665.txt.gz
PGS004666
(logTG_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,880,060
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004666/ScoringFiles/PGS004666.txt.gz
PGS004667
(TC_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,830
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004667/ScoringFiles/PGS004667.txt.gz
PGS004668
(TC_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,691,065
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004668/ScoringFiles/PGS004668.txt.gz
PGS004669
(TC_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004669/ScoringFiles/PGS004669.txt.gz
PGS004670
(TC_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 158,252
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004670/ScoringFiles/PGS004670.txt.gz
PGS004671
(TC_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004671/ScoringFiles/PGS004671.txt.gz
PGS004672
(TC_EAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 65,005
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004672/ScoringFiles/PGS004672.txt.gz
PGS004673
(TC_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 823,148
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004673/ScoringFiles/PGS004673.txt.gz
PGS004674
(TC_EAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004674/ScoringFiles/PGS004674.txt.gz
PGS004675
(TC_EAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 158,252
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004675/ScoringFiles/PGS004675.txt.gz
PGS004676
(TC_EAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004676/ScoringFiles/PGS004676.txt.gz
PGS004677
(TC_SAS_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 2,421
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004677/ScoringFiles/PGS004677.txt.gz
PGS004678
(TC_SAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,471,975
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004678/ScoringFiles/PGS004678.txt.gz
PGS004679
(TC_SAS_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,728,954
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004679/ScoringFiles/PGS004679.txt.gz
PGS004680
(TC_SAS_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 158,252
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004680/ScoringFiles/PGS004680.txt.gz
PGS004681
(TC_SAS_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Total cholesterol total cholesterol measurement 1,872,229
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004681/ScoringFiles/PGS004681.txt.gz
PGS004682
(height_AFR_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Height body height 906
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004682/ScoringFiles/PGS004682.txt.gz
PGS004683
(height_AFR_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Height body height 774,968
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004683/ScoringFiles/PGS004683.txt.gz
PGS004684
(height_AFR_PROSPER)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Height body height 859,897
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004684/ScoringFiles/PGS004684.txt.gz
PGS004685
(height_AFR_weighted_lassosum2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Height body height 279,186
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004685/ScoringFiles/PGS004685.txt.gz
PGS004686
(height_AFR_weighted_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Height body height 872,587
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004686/ScoringFiles/PGS004686.txt.gz
PGS004687
(bladder_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Bladder cancer urinary bladder carcinoma 1,077,775
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004687/ScoringFiles/PGS004687.txt.gz
PGS004688
(breast_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Breast cancer breast carcinoma 1,044,110
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004688/ScoringFiles/PGS004688.txt.gz
PGS004689
(colorectal_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Colorectal cancer colorectal carcinoma 1,077,789
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004689/ScoringFiles/PGS004689.txt.gz
PGS004690
(kidney_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Kidney cancer renal carcinoma 6,351,669
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004690/ScoringFiles/PGS004690.txt.gz
PGS004691
(lung_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Lung cancer lung carcinoma 950,353
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004691/ScoringFiles/PGS004691.txt.gz
PGS004692
(ovarian_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Ovarian cancer ovarian carcinoma 6,385,666
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004692/ScoringFiles/PGS004692.txt.gz
PGS004693
(pancreatic_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Pancreatic cancer pancreatic carcinoma 6,351,686
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004693/ScoringFiles/PGS004693.txt.gz
PGS004694
(prostate_cancer)
 PGP000596 |
Hu J et al. JNCI Cancer Spectr (2024)
 Prostate cancer prostate carcinoma 1,016,708
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004694/ScoringFiles/PGS004694.txt.gz
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