Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001131
(GBE_HC530)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Zoster [herpes zoster] (time-to-event) Herpes Zoster 82
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001131/ScoringFiles/PGS001131.txt.gz
PGS001772
(GBE_INI23005)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 ZEBRA antigen for Epstein-Barr Virus anti-Epstein Barr virus antibody measurement 158
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001772/ScoringFiles/PGS001772.txt.gz
PGS004508
(disease.Z96.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z96 (Presence of other functional implants) medical procedure 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004508/ScoringFiles/PGS004508.txt.gz
PGS004578
(meta.Z96.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z96 (Presence of other functional implants) medical procedure 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004578/ScoringFiles/PGS004578.txt.gz
PGS004507
(disease.Z95.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z95 (Presence of cardiac and vascular implants and grafts) medical procedure 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004507/ScoringFiles/PGS004507.txt.gz
PGS004577
(meta.Z95.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z95 (Presence of cardiac and vascular implants and grafts) medical procedure 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004577/ScoringFiles/PGS004577.txt.gz
PGS004506
(disease.Z92.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z92 (Personal history of medical treatment) clinical history 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004506/ScoringFiles/PGS004506.txt.gz
PGS004576
(meta.Z92.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z92 (Personal history of medical treatment) clinical history 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004576/ScoringFiles/PGS004576.txt.gz
PGS004505
(disease.Z88.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z88 (Personal history of allergy to drugs, medicaments and biologocal substances) clinical history 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004505/ScoringFiles/PGS004505.txt.gz
PGS004575
(meta.Z88.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z88 (Personal history of allergy to drugs, medicaments and biologocal substances) clinical history 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004575/ScoringFiles/PGS004575.txt.gz
PGS004504
(disease.Z82.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z82 (Family history of certain disabilities and chronic diseases leading to disablement) family history 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004504/ScoringFiles/PGS004504.txt.gz
PGS004574
(meta.Z82.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z82 (Family history of certain disabilities and chronic diseases leading to disablement) family history 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004574/ScoringFiles/PGS004574.txt.gz
PGS004503
(disease.Z72.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z72 (Problems related to lifestyle) wellbeing measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004503/ScoringFiles/PGS004503.txt.gz
PGS004573
(meta.Z72.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z72 (Problems related to lifestyle) wellbeing measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004573/ScoringFiles/PGS004573.txt.gz
PGS004502
(disease.Z53.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z53 (Persons encountering health services for specifie procedures, not carried out) encounter with health service 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004502/ScoringFiles/PGS004502.txt.gz
PGS004572
(meta.Z53.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Z53 (Persons encountering health services for specifie procedures, not carried out) encounter with health service 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004572/ScoringFiles/PGS004572.txt.gz
PGS001022
(GBE_BIN2000)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Worry too long after an embarrassing experience worry measurement 7,714
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001022/ScoringFiles/PGS001022.txt.gz
PGS000843
(WHRadjBMI)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 WHR adjusted for BMI BMI-adjusted waist-hip ratio 63
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000843/ScoringFiles/PGS000843.txt.gz
PGS001002
(GBE_INI23102)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Whole body water mass whole body water mass 35,046
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001002/ScoringFiles/PGS001002.txt.gz
PGS001984
(portability-PLR_log_water_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body water mass whole body water mass 127,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001984/ScoringFiles/PGS001984.txt.gz
PGS002202
(portability-ldpred2_log_water_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body water mass whole body water mass 966,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002202/ScoringFiles/PGS002202.txt.gz
PGS003556
(cont-decay-log_water_mass)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Whole body water mass whole body water mass 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003556/ScoringFiles/PGS003556.txt.gz
PGS003902
(INI23102)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Whole body water mass whole body water mass 43,166
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003902/ScoringFiles/PGS003902.txt.gz
PGS004377
(X23102.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Whole body water mass whole body water mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004377/ScoringFiles/PGS004377.txt.gz
PGS001161
(GBE_INI23106)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Whole body impedance body composition measurement 32,218
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001161/ScoringFiles/PGS001161.txt.gz
PGS001149
(GBE_INI23100)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Whole body fat mass fat body mass 27,550
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001149/ScoringFiles/PGS001149.txt.gz
PGS001951
(portability-PLR_log_fat_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat mass fat body mass 107,776
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001951/ScoringFiles/PGS001951.txt.gz
PGS002169
(portability-ldpred2_log_fat_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat mass fat body mass 988,292
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002169/ScoringFiles/PGS002169.txt.gz
PGS003532
(cont-decay-log_fat_mass)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Whole body fat mass fat body mass 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003532/ScoringFiles/PGS003532.txt.gz
PGS003900
(INI23100)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Whole body fat mass fat body mass 33,555
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003900/ScoringFiles/PGS003900.txt.gz
PGS004375
(X23100.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Whole body fat mass fat body mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004375/ScoringFiles/PGS004375.txt.gz
PGS001950
(portability-PLR_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 128,827
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001950/ScoringFiles/PGS001950.txt.gz
PGS002168
(portability-ldpred2_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 966,825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002168/ScoringFiles/PGS002168.txt.gz
PGS003531
(cont-decay-log_fat_free_mass)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Whole body fat-free mass lean body mass 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003531/ScoringFiles/PGS003531.txt.gz
PGS003901
(INI23101)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Whole body fat-free mass lean body mass 42,786
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003901/ScoringFiles/PGS003901.txt.gz
PGS004376
(X23101.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Whole body fat-free mass lean body mass 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004376/ScoringFiles/PGS004376.txt.gz
PGS001169
(GBE_INI23101)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Whole body fat free mass lean body mass 34,486
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001169/ScoringFiles/PGS001169.txt.gz
PGS001962
(portability-PLR_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte count 80,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001962/ScoringFiles/PGS001962.txt.gz
PGS002180
(portability-ldpred2_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte count 846,337
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002180/ScoringFiles/PGS002180.txt.gz
PGS003541
(cont-decay-log_leukocyte)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 White blood cell (leukocyte) count leukocyte count 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003541/ScoringFiles/PGS003541.txt.gz
PGS003924
(INI30000)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 White blood cell (leukocyte) count leukocyte count 17,890
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003924/ScoringFiles/PGS003924.txt.gz
PGS004345
(X30000.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 White blood cell (leukocyte) count leukocyte count 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004345/ScoringFiles/PGS004345.txt.gz
PGS000113
(wbc)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 White blood cell count leukocyte count 28,383
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000113/ScoringFiles/PGS000113.txt.gz
PGS000191
(wbc)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 White blood cell count leukocyte count 636
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000191/ScoringFiles/PGS000191.txt.gz
PGS001239
(GBE_INI30000)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 White blood cell count leukocyte count 13,785
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001239/ScoringFiles/PGS001239.txt.gz
PGS002357
(blood_WHITE_COUNT.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte count 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002357/ScoringFiles/PGS002357.txt.gz
PGS002380
(blood_WHITE_COUNT.BOLT-LMM-BBJ)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte count 920,936
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002380/ScoringFiles/PGS002380.txt.gz
PGS002429
(blood_WHITE_COUNT.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte count 13,898
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002429/ScoringFiles/PGS002429.txt.gz
PGS002478
(blood_WHITE_COUNT.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte count 35,005
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002478/ScoringFiles/PGS002478.txt.gz
PGS002527
(blood_WHITE_COUNT.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte count 141,866
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002527/ScoringFiles/PGS002527.txt.gz
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