Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS000736
(PRS_QRS)
PGP000144 |
Tadros R et al. Eur Heart J (2019)
QRS duration QRS duration 26
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000736/ScoringFiles/PGS000736.txt.gz
PGS000735
(PRS_PR)
PGP000144 |
Tadros R et al. Eur Heart J (2019)
PR interval PR interval 44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000735/ScoringFiles/PGS000735.txt.gz
PGS000734
(PRS95_CRC)
PGP000142 |
Archambault AN et al. Gastroenterology (2019)
Colorectal cancer colorectal cancer 95
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000734/ScoringFiles/PGS000734.txt.gz
PGS000733
(PHS46+African)
PGP000139 |
Karunamuni RA et al. Int J Cancer (2020)
Prostate cancer prostate carcinoma 49
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000733/ScoringFiles/PGS000733.txt.gz
PGS000732
(PRS_Melanoma)
PGP000138 |
Fontanillas P et al. Nat Commun (2021)
Melanoma melanoma 18
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000732/ScoringFiles/PGS000732.txt.gz - Check Terms/Licenses
PGS000731
(PRS_SCC)
PGP000138 |
Fontanillas P et al. Nat Commun (2021)
Squamous cell carcinoma squamous cell carcinoma 14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000731/ScoringFiles/PGS000731.txt.gz - Check Terms/Licenses
PGS000730
(PRS_BCC)
PGP000138 |
Fontanillas P et al. Nat Commun (2021)
Basal cell carcinoma basal cell carcinoma 47
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000730/ScoringFiles/PGS000730.txt.gz - Check Terms/Licenses
PGS000729
(T2D_PGS)
PGP000137 |
Ritchie SC et al. Nat Metab (2021)
Type 2 diabetes (T2D) type 2 diabetes mellitus 2,017,388
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000729/ScoringFiles/PGS000729.txt.gz
PGS000728
(CKD_PGS)
PGP000137 |
Ritchie SC et al. Nat Metab (2021)
Chronic kidney disease chronic kidney disease 1,958,860
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000728/ScoringFiles/PGS000728.txt.gz
PGS000727
(AF_PGS)
PGP000137 |
Ritchie SC et al. Nat Metab (2021)
Atrial fibrillation atrial fibrillation 2,210,336
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000727/ScoringFiles/PGS000727.txt.gz
PGS000726
(PGS12_CIR)
PGP000136 |
Emdin CA et al. Gastroenterology (2020)
Cirrhosis cirrhosis of liver 12
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000726/ScoringFiles/PGS000726.txt.gz
PGS000725
(PRS_Pancreas)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Pancreatic cancer pancreatic carcinoma 22
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000725/ScoringFiles/PGS000725.txt.gz
PGS000724
(PRS_Ovary)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Epithelial ovarian cancer ovarian carcinoma 31
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000724/ScoringFiles/PGS000724.txt.gz
PGS000723
(PRS_Bladder)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Bladder cancer urinary bladder carcinoma 14
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000723/ScoringFiles/PGS000723.txt.gz
PGS000722
(PRS_Kidney)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Kidney cancer renal carcinoma 15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000722/ScoringFiles/PGS000722.txt.gz
PGS000721
(PRS_Lung)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Lung cancer lung carcinoma 19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000721/ScoringFiles/PGS000721.txt.gz
PGS000720
(PRS_Colorectal)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Colorectal cancer colorectal cancer 95
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000720/ScoringFiles/PGS000720.txt.gz
PGS000719
(PRS_Prostate)
PGP000135 |
Jia G et al. JNCI Cancer Spectr (2020)
Prostate cancer prostate carcinoma 134
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000719/ScoringFiles/PGS000719.txt.gz
PGS000718
(PRPBB_44)
PGP000134 |
Lanfear DE et al. Circ Heart Fail (2020)
Beta-blocker survival benefit response to beta blocker 44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000718/ScoringFiles/PGS000718.txt.gz
PGS000717
(PGS557_albs)
PGP000132 |
Richardson TG et al. BMJ (2020)
Adult life body size body mass index 557
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000717/ScoringFiles/PGS000717.txt.gz
PGS000716
(PGS295_elbs)
PGP000132 |
Richardson TG et al. BMJ (2020)
Early life body size body mass index,
comparative body size at age 10, self-reported
295
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000716/ScoringFiles/PGS000716.txt.gz
PGS000714
(PRS55_PC)
PGP000130 |
Sipeky C et al. Sci Rep (2020)
Prostate cancer prostate carcinoma 55
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000714/ScoringFiles/PGS000714.txt.gz
PGS000713
(T2D)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Type 2 diabetes (T2D) type 2 diabetes mellitus 183,830
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000713/ScoringFiles/PGS000713.txt.gz - Check Terms/Licenses
PGS000712
(T2D_HbA1c_39)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
T2D (cases vs HbA1c filtered controls) type 2 diabetes mellitus 183,695
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000712/ScoringFiles/PGS000712.txt.gz - Check Terms/Licenses
PGS000711
(HC328)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Gout gout 183,332
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000711/ScoringFiles/PGS000711.txt.gz - Check Terms/Licenses
PGS000710
(HC326)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Myocardial infarction myocardial infarction 183,566
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000710/ScoringFiles/PGS000710.txt.gz - Check Terms/Licenses
PGS000709
(HC299)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Heart failure heart failure 183,287
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000709/ScoringFiles/PGS000709.txt.gz - Check Terms/Licenses
PGS000708
(HC294)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Kidney failure kidney failure 183,272
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000708/ScoringFiles/PGS000708.txt.gz - Check Terms/Licenses
PGS000707
(HC225)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Cholecystitis Cholecystitis 183,329
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000707/ScoringFiles/PGS000707.txt.gz - Check Terms/Licenses
PGS000706
(HC215)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Hypertension hypertension 186,726
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000706/ScoringFiles/PGS000706.txt.gz - Check Terms/Licenses
PGS000705
(HC188)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Gallstones gallstones 183,458
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000705/ScoringFiles/PGS000705.txt.gz - Check Terms/Licenses
PGS000704
(HC171)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Alcoholic cirrhosis alcoholic liver cirrhosis 183,271
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000704/ScoringFiles/PGS000704.txt.gz - Check Terms/Licenses
PGS000703
(HC132)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Angina angina pectoris 183,692
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000703/ScoringFiles/PGS000703.txt.gz - Check Terms/Licenses
PGS000702
(snpnet.Vitamin_D)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Vitamin D [nmol/L] vitamin D amount 8,012
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000702/ScoringFiles/PGS000702.txt.gz - Check Terms/Licenses
PGS000701
(snpnet.Urea)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Urea [mmol/L] serum urea amount 12,351
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000701/ScoringFiles/PGS000701.txt.gz - Check Terms/Licenses
PGS000700
(snpnet.Urate)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Urate [umol/L] urate measurement 20,171
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000700/ScoringFiles/PGS000700.txt.gz - Check Terms/Licenses
PGS000699
(snpnet.Triglycerides)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Triglycerides [mmol/L] triglyceride measurement 16,003
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000699/ScoringFiles/PGS000699.txt.gz - Check Terms/Licenses
PGS000698
(snpnet.Total_protein)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Total protein [g/L] total blood protein measurement 16,420
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000698/ScoringFiles/PGS000698.txt.gz - Check Terms/Licenses
PGS000697
(snpnet.Total_bilirubin)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Total bilirubin [umol/L] bilirubin measurement 1,159
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000697/ScoringFiles/PGS000697.txt.gz - Check Terms/Licenses
PGS000696
(snpnet.Testosterone)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Testosterone [nmol/L] testosterone measurement 8,223
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000696/ScoringFiles/PGS000696.txt.gz - Check Terms/Licenses
PGS000695
(snpnet.Sodium_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Sodium in urine [mmol/L] urinary metabolite measurement,
sodium measurement
5,833
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz - Check Terms/Licenses
PGS000694
(snpnet.SHBG)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
SHBG [nmol/L] sex hormone-binding globulin measurement 19,328
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000694/ScoringFiles/PGS000694.txt.gz - Check Terms/Licenses
PGS000693
(snpnet.Potassium_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Potassium in urine [mmol/L] urine potassium amount 2,423
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000693/ScoringFiles/PGS000693.txt.gz - Check Terms/Licenses
PGS000692
(snpnet.Phosphate)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Phosphate [mmol/L] phosphate measurement 12,448
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000692/ScoringFiles/PGS000692.txt.gz - Check Terms/Licenses
PGS000691
(snpnet.Non_albumin_protein)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Non-albumin protein [g/L] level of serum globulin type protein 18,670
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000691/ScoringFiles/PGS000691.txt.gz - Check Terms/Licenses
PGS000690
(snpnet.Microalbumin_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Microalbumin in urine [mg/L] urinary microalbumin measurement 111
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000690/ScoringFiles/PGS000690.txt.gz - Check Terms/Licenses
PGS000689
(snpnet.Lipoprotein_A)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Lipoprotein A [nmol/L] lipoprotein A measurement 8,308
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000689/ScoringFiles/PGS000689.txt.gz - Check Terms/Licenses
PGS000688
(snpnet.LDL_direct_adjstatins)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
LDL cholesterol [mmol/L] (statin adjusted) low density lipoprotein cholesterol measurement 16,184
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000688/ScoringFiles/PGS000688.txt.gz - Check Terms/Licenses
PGS000687
(snpnet.IGF_1)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
IGF-1 [nmol/L] IGF-1 measurement 23,443
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000687/ScoringFiles/PGS000687.txt.gz - Check Terms/Licenses
PGS000686
(snpnet.HDL_cholesterol)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
HDL cholesterol [mmol/L] high density lipoprotein cholesterol measurement 25,069
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000686/ScoringFiles/PGS000686.txt.gz - Check Terms/Licenses