Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004251
(PRS125_prostate)
 PGP000542 |
Kim ES et al. NPJ Precis Oncol (2023)
 Prostate cancer prostate carcinoma 125
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004251/ScoringFiles/PGS004251.txt.gz
PGS003458
(PRS_AT)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 General atopic disease allergic disease 124
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003458/ScoringFiles/PGS003458.txt.gz
PGS001028
(GBE_BIN_FC1006148)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Diabetic eye disease diabetic eye disease 123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001028/ScoringFiles/PGS001028.txt.gz
PGS000579
(PRSWEB_PHECODE185_GWAS-Catalog-r2019-05-03-X185_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 122
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000579/ScoringFiles/PGS000579.txt.gz
PGS000841
(BMI)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 Body mass index (BMI) body mass index 122
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000841/ScoringFiles/PGS000841.txt.gz
PGS003755
(wGRS_SLE)
 PGP000475 |
Kwon YC et al. Arthritis Rheumatol (2023)
 Systemic lupus erythematosus systemic lupus erythematosus 122
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003755/ScoringFiles/PGS003755.txt.gz
PGS001305
(GBE_HC608)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Vitamin B12 deficiency induced anemia (time-to-event) vitamin B12 deficiency,
anemia		 121
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001305/ScoringFiles/PGS001305.txt.gz
PGS000064
(GLGC2017_HDL)
 PGP000046 |
Kuchenbaecker K et al. Nat Commun (2019)
 HDL cholesterol high density lipoprotein cholesterol measurement 120
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000064/ScoringFiles/PGS000064.txt.gz
PGS000478
(PRSWEB_PHECODE174.1_C3-BREAST-3_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 120
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000478/ScoringFiles/PGS000478.txt.gz
PGS000580
(PRSWEB_PHECODE185_GWAS-Catalog-r2019-05-03-X185_PT_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 118
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000580/ScoringFiles/PGS000580.txt.gz
PGS000930
(GBE_BIN_FC3006152)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Blood clot (diagnosed by doctor) thrombotic disease 118
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000930/ScoringFiles/PGS000930.txt.gz
PGS001027
(GBE_HC1228)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Internal derangement of knee (time-to-event) knee injury 118
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001027/ScoringFiles/PGS001027.txt.gz
PGS003110
(ExPRSweb_T2D_29358691-GCST005413_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 118
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003110/ScoringFiles/PGS003110.txt.gz
PGS003743
(PRS118_PrC)
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Prostate cancer prostate carcinoma 118
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003743/ScoringFiles/PGS003743.txt.gz
PGS000577
(PRSWEB_PHECODE185_GWAS-Catalog-r2019-05-03-X185_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 117
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000577/ScoringFiles/PGS000577.txt.gz
PGS000578
(PRSWEB_PHECODE185_GWAS-Catalog-r2019-05-03-X185_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Prostate cancer prostate carcinoma 117
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000578/ScoringFiles/PGS000578.txt.gz
PGS001808
(portability-PLR_191.11)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Brain cancer brain cancer 117
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001808/ScoringFiles/PGS001808.txt.gz
PGS003774
(HDL_EAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 117
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003774/ScoringFiles/PGS003774.txt.gz
PGS001064
(GBE_BIN_FC30001418)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Milk consumption (skimmed) diet measurement 116
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001064/ScoringFiles/PGS001064.txt.gz
PGS001304
(GBE_cancer1059)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Melanoma (malignant) melanoma 116
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001304/ScoringFiles/PGS001304.txt.gz
PGS001494
(GBE_INI25462)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ISOVF in anterior corona radiata on FA skeleton (R) neuroimaging measurement,
brain volume measurement		 116
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001494/ScoringFiles/PGS001494.txt.gz
PGS003803
(logTG_AFR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003803/ScoringFiles/PGS003803.txt.gz
PGS001527
(GBE_INI22332)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 QTc interval (QT interval according to Bazett) QT interval 115
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001527/ScoringFiles/PGS001527.txt.gz
PGS001546
(GBE_INI25888)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Amygdala (L) neuroimaging measurement,
grey matter volume measurement		 115
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001546/ScoringFiles/PGS001546.txt.gz
PGS002742
(PRS115_EAS)
 PGP000354 |
Ping J et al. Int J Cancer (2022)
 Colorectal cancer colorectal cancer 115
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002742/ScoringFiles/PGS002742.txt.gz
PGS002743
(PRS115_EUR)
 PGP000354 |
Ping J et al. Int J Cancer (2022)
 Colorectal cancer colorectal cancer 115
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002743/ScoringFiles/PGS002743.txt.gz
PGS002744
(PRS115_EUR_EAS)
 PGP000354 |
Ping J et al. Int J Cancer (2022)
 Colorectal cancer colorectal cancer 115
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002744/ScoringFiles/PGS002744.txt.gz
PGS000126
(Urate_GRS)
 PGP000063 |
Tin A et al. Nat Genet (2019)
 Serum urate urate measurement 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000126/ScoringFiles/PGS000126.txt.gz
PGS001496
(GBE_INI25475)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean ISOVF in cingulum cingulate gyrus on FA skeleton (L) neuroimaging measurement,
brain volume measurement		 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001496/ScoringFiles/PGS001496.txt.gz
PGS001513
(GBE_INI25027)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Median T2star in thalamus (R) neuroimaging measurement 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001513/ScoringFiles/PGS001513.txt.gz
PGS003575
(mloy-PRS)
 PGP000460 |
García-González P et al. Int J Mol Sci (2023)
 Mosaic loss of chromosome Y mosaic loss of chromosome Y measurement 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003575/ScoringFiles/PGS003575.txt.gz
PGS000827
(WaistCircumference_PGS_M)
 PGP000210 |
Zubair N et al. Sci Rep (2019)
 Waist circumference (male) waist circumference,
male		 113
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000827/ScoringFiles/PGS000827.txt.gz - Check Terms/Licenses
PGS003756
(wGRS_SLE_non-HLA)
 PGP000475 |
Kwon YC et al. Arthritis Rheumatol (2023)
 Systemic lupus erythematosus systemic lupus erythematosus 112
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003756/ScoringFiles/PGS003756.txt.gz
PGS000690
(snpnet.Microalbumin_in_urine)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Microalbumin in urine [mg/L] urinary microalbumin measurement 111
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000690/ScoringFiles/PGS000690.txt.gz - Check Terms/Licenses
PGS000932
(GBE_HC1248)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other intervertebral disk disorders (time-to-event) vertebral column disorder 111
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000932/ScoringFiles/PGS000932.txt.gz
PGS001809
(portability-PLR_193)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyroid cancer thyroid carcinoma 111
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001809/ScoringFiles/PGS001809.txt.gz
PGS002294
(PRS111)
 PGP000324 |
Yang Y et al. JAMA Netw Open (2022)
 Breast cancer breast carcinoma 111
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002294/ScoringFiles/PGS002294.txt.gz
PGS000533
(PRSWEB_PHECODE174.1_iCOGS-Overall-BRCA_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 110
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000533/ScoringFiles/PGS000533.txt.gz
PGS000534
(PRSWEB_PHECODE174.1_iCOGS-Overall-BRCA_P_5e-08_UKB_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 110
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000534/ScoringFiles/PGS000534.txt.gz
PGS004264
(GenoBoost_psoriasis_4)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Psoriasis psoriasis 110
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004264/ScoringFiles/PGS004264.txt.gz
PGS004273
(GenoBoost_inflammatory_bowel_disease_3)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 Inflammatory bowel disease inflammatory bowel disease 110
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004273/ScoringFiles/PGS004273.txt.gz
PGS004281
(GenoBoost_all-cause_dementia_1)
 PGP000546 |
Ohta R et al. Nat Commun (2024)
 All-cause dementia dementia 110
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004281/ScoringFiles/PGS004281.txt.gz
PGS000078
(CC_Lung)
 PGP000050 |
Graff RE et al. Nat Commun (2021)
 Lung cancer lung carcinoma 109
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000078/ScoringFiles/PGS000078.txt.gz
PGS000789
(CC_Lung_IV)
 PGP000186 |
Kachuri L et al. Nat Commun (2020)
 Lung cancer lung carcinoma 109
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000789/ScoringFiles/PGS000789.txt.gz
PGS003808
(logTG_EAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 109
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003808/ScoringFiles/PGS003808.txt.gz
PGS000433
(PRSWEB_PHECODE172.2_C3-OTHER-SKIN_P_5e-08_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Other non-epithelial skin cancer skin cancer 108
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000433/ScoringFiles/PGS000433.txt.gz
PGS003250
(ExPRSweb_Creatine_CKDGen-1000Genomes-DiscoveryMeta-eGFRcrea_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine measurement		 108
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003250/ScoringFiles/PGS003250.txt.gz
PGS003251
(ExPRSweb_Creatine_CKDGen-1000Genomes-DiscoveryMeta-eGFRcrea_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Estimated glomerular filtration rate (Creatine) glomerular filtration rate,
creatine measurement		 108
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003251/ScoringFiles/PGS003251.txt.gz
PGS003401
(TG.PS)
 PGP000418 |
Pieri K et al. Int J Cardiol (2022)
 Triglyceride levels triglyceride measurement 108
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003401/ScoringFiles/PGS003401.txt.gz
PGS004908
(PRS107_KC)
 PGP000640 |
Purdue MP et al. Nat Genet (2024)
 Kidney cancer renal carcinoma 107
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004908/ScoringFiles/PGS004908.txt.gz
Showing 4151 to 4200 of 5001 rows