Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003729
(PS_T2D_293-DIAGRAM)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 293
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003729/ScoringFiles/PGS003729.txt.gz
PGS000406
(PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Skin cancer skin carcinoma 292
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000406/ScoringFiles/PGS000406.txt.gz
PGS001807
(portability-PLR_189.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Bladder cancer urinary bladder carcinoma 291
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001807/ScoringFiles/PGS001807.txt.gz
PGS000815
(GRS290_ALP)
 PGP000201 |
Pazoki R et al. Nat Commun (2021)
 Alkaline phosphatase alkaline phosphatase measurement 290
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000815/ScoringFiles/PGS000815.txt.gz
PGS000829
(BMI_PGS_M)
 PGP000210 |
Zubair N et al. Sci Rep (2019)
 Body mass index (BMI) (male) body mass index,
male		 290
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000829/ScoringFiles/PGS000829.txt.gz - Check Terms/Licenses
PGS001716
(GBE_INI25599)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA L2 in tract anterior thalamic radiation (R) neuroimaging measurement,
brain volume		 290
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001716/ScoringFiles/PGS001716.txt.gz
PGS003331
(PHS290)
 PGP000397 |
Huynh-Le MP et al. Prostate Cancer Prostatic Dis (2022)
 Prostate cancer prostate carcinoma 290
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003331/ScoringFiles/PGS003331.txt.gz
PGS001568
(GBE_INI25810)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Inferior Temporal Gyrus, posterior division (L) neuroimaging measurement,
grey matter volume measurement		 288
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001568/ScoringFiles/PGS001568.txt.gz
PGS003861
(PRS288_PE)
 PGP000499 |
Zhang Z et al. BMC Med (2023)
 Pulmonary embolism pulmonary embolism 288
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003861/ScoringFiles/PGS003861.txt.gz
PGS000344
(PRS287_BC)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Breast cancer breast carcinoma 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000344/ScoringFiles/PGS000344.txt.gz
PGS000346
(PRS287_ERneg)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Estrogen receptor negative breast cancer estrogen-receptor negative breast cancer 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000346/ScoringFiles/PGS000346.txt.gz
PGS000347
(PRS287_ERpos)
 PGP000112 |
Ho WK et al. Nat Commun (2020)
 Estrogen receptor positive breast cancer estrogen-receptor positive breast cancer 287
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000347/ScoringFiles/PGS000347.txt.gz
PGS003353
(GRS_T2D)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003353/ScoringFiles/PGS003353.txt.gz
PGS003730
(PS_T2D_287-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003730/ScoringFiles/PGS003730.txt.gz
PGS003732
(PS_T2D_287-HIS-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003732/ScoringFiles/PGS003732.txt.gz
PGS003733
(PS_T2D_287-EUR-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003733/ScoringFiles/PGS003733.txt.gz
PGS004586
(PPS_CRC)
 PGP000564 |
Xin J et al. Nat Commun (2024)
 Colorectal cancer colorectal carcinoma 287
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004586/ScoringFiles/PGS004586.txt.gz
PGS002284
(GRS_286_HDL)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002284/ScoringFiles/PGS002284.txt.gz
PGS002285
(GRS_286_LDL)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002285/ScoringFiles/PGS002285.txt.gz
PGS002286
(GRS_286_TC)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 Total cholesterol total cholesterol measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002286/ScoringFiles/PGS002286.txt.gz
PGS002287
(GRS_286_TG)
 PGP000313 |
Kamiza AB et al. Nat Med (2022)
 Triglyceride triglyceride measurement 286
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002287/ScoringFiles/PGS002287.txt.gz
PGS003597
(R_GC-ML-DG_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right granule cell and molecular layer of the dentate gyrus head volume dentate gyrus volume 283
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003597/ScoringFiles/PGS003597.txt.gz
PGS003731
(PS_T2D_282-SAS-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 282
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003731/ScoringFiles/PGS003731.txt.gz
PGS002924
(ExPRSweb_FPG_FGovertime-corrected_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Fasting plasma glucose blood glucose amount 281
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002924/ScoringFiles/PGS002924.txt.gz
PGS001164
(GBE_cancer1045)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Testicular cancer testicular cancer 280
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001164/ScoringFiles/PGS001164.txt.gz
PGS001815
(portability-PLR_242)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyrotoxicosis with or without goiter thyrotoxicosis 280
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001815/ScoringFiles/PGS001815.txt.gz
PGS003734
(PS_T2D_280-EAS-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 280
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003734/ScoringFiles/PGS003734.txt.gz
PGS000210
(LF279)
 PGP000086 |
Shrine N et al. Nat Genet (2019)
 Lung function (FEV1/FVC) FEV/FVC ratio 279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000210/ScoringFiles/PGS000210.txt.gz
PGS002274
(LDL-PRS)
 PGP000303 |
Groenland EH et al. Atherosclerosis (2022)
 LDL cholesterol low density lipoprotein cholesterol measurement 279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002274/ScoringFiles/PGS002274.txt.gz
PGS003661
(R_hippocampal_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right hippocampal body volume hippocampal volume 279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003661/ScoringFiles/PGS003661.txt.gz
PGS003460
(PRS278_PCa)
 PGP000453 |
Chen F et al. Eur Urol (2023)
 Prostate cancer prostate carcinoma 278
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003460/ScoringFiles/PGS003460.txt.gz
PGS003735
(PS_T2D_276-AFR-DIAMANTE)
 PGP000469 |
Wedekind LE et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 276
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003735/ScoringFiles/PGS003735.txt.gz
PGS000846
(LDL)
 PGP000211 |
Aly DM et al. Nat Genet (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 275
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000846/ScoringFiles/PGS000846.txt.gz
PGS001593
(GBE_INI25882)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Putamen (L) neuroimaging measurement,
grey matter volume measurement		 274
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001593/ScoringFiles/PGS001593.txt.gz
PGS001514
(GBE_INI87)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Non-cancer illness year/age first occurred disease 273
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001514/ScoringFiles/PGS001514.txt.gz
PGS002931
(ExPRSweb_FPG_MAGIC-FastingGlucose_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Fasting plasma glucose blood glucose amount 273
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002931/ScoringFiles/PGS002931.txt.gz
PGS003417
(UKBPRS)
 PGP000429 |
Seviiri M et al. Nat Commun (2022)
 Basal cell carcinoma basal cell carcinoma 273
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003417/ScoringFiles/PGS003417.txt.gz
PGS003456
(PRS273_VTE)
 PGP000449 |
Folsom AR et al. PLoS One (2023)
 Venous thromboembolism venous thromboembolism 273
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003456/ScoringFiles/PGS003456.txt.gz
PGS003042
(ExPRSweb_PUFAs_MAGNETIC-otPUFA_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Polyunsatturated fatty acids polyunsaturated fatty acid measurement 272
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003042/ScoringFiles/PGS003042.txt.gz
PGS000523
(PRSWEB_PHECODE174.1_iCOGS-ER-negative-BRCA_LASSOSUM_MGI_20200608)
 PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
 Breast cancer (female) breast carcinoma 270
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000523/ScoringFiles/PGS000523.txt.gz
PGS000662
(GRS.PCa.269)
 PGP000122 |
Conti DV et al. Nat Genet (2021)
 Prostate cancer prostate carcinoma 269
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000662/ScoringFiles/PGS000662.txt.gz
PGS003415
(PGS268_PCa)
 PGP000428 |
Nyberg T et al. J Clin Oncol (2022)
 Prostate cancer prostate carcinoma 268
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003415/ScoringFiles/PGS003415.txt.gz
PGS002589
(disease_DIABETES_ANY_DIAGNOSED.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Diabetes (any type) diabetes mellitus 267
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002589/ScoringFiles/PGS002589.txt.gz
PGS001412
(GBE_INI22420)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 LV ejection fraction left ventricular ejection fraction measurement 266
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001412/ScoringFiles/PGS001412.txt.gz
PGS002773
(GTG_AF_maxCT)
 PGP000365 |
Wong CK et al. PLoS One (2022)
 Incident atrial fibrillation atrial fibrillation 265
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002773/ScoringFiles/PGS002773.txt.gz - Check Terms/Licenses
PGS000963
(GBE_HC1184)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Follicular cysts of skin and subcutaneous tissue (time-to-event) Follicular Cyst 264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000963/ScoringFiles/PGS000963.txt.gz
PGS001603
(GBE_INI25854)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Volume of grey matter in Temporal Fusiform Cortex, anterior division (L) neuroimaging measurement,
grey matter volume measurement		 264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001603/ScoringFiles/PGS001603.txt.gz
PGS001871
(portability-PLR_696.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Psoriasis psoriasis 264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001871/ScoringFiles/PGS001871.txt.gz
PGS002930
(ExPRSweb_FPG_MAGIC-FastingGlucose_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Fasting plasma glucose blood glucose amount 264
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002930/ScoringFiles/PGS002930.txt.gz
PGS003122
(ExPRSweb_T2D_METAANALYSIS-DIAGRAM_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 264
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003122/ScoringFiles/PGS003122.txt.gz
Showing 4151 to 4200 of 5337 rows